Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   VP466_RS05560 Genome accession   NZ_CP142895
Coordinates   1159806..1160690 (+) Length   294 a.a.
NCBI ID   WP_000914776.1    Uniprot ID   A0A9P3CWB8
Organism   Acinetobacter baumannii strain B20AB10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154806..1165690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP466_RS05535 (VP466_05540) - 1155204..1156451 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  VP466_RS05540 (VP466_05545) wrbA 1156739..1157332 (+) 594 WP_001183357.1 NAD(P)H:quinone oxidoreductase -
  VP466_RS05545 (VP466_05550) - 1157385..1157960 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  VP466_RS05550 (VP466_05555) - 1158033..1158746 (-) 714 WP_000201548.1 DUF3108 domain-containing protein -
  VP466_RS05555 (VP466_05560) - 1158904..1159575 (-) 672 WP_001193958.1 hypothetical protein -
  VP466_RS05560 (VP466_05565) tonB2 1159806..1160690 (+) 885 WP_000914776.1 energy transducer TonB Machinery gene
  VP466_RS05565 (VP466_05570) ybeY 1160780..1161256 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  VP466_RS05570 (VP466_05575) - 1161266..1162354 (-) 1089 WP_000122983.1 PhoH family protein -
  VP466_RS05575 (VP466_05580) miaB 1162392..1163843 (-) 1452 WP_000218140.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33650.54 Da        Isoelectric Point: 9.0935

>NTDB_id=927575 VP466_RS05560 WP_000914776.1 1159806..1160690(+) (tonB2) [Acinetobacter baumannii strain B20AB10]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=927575 VP466_RS05560 WP_000914776.1 1159806..1160690(+) (tonB2) [Acinetobacter baumannii strain B20AB10]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997