Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   DGAOKPDK_RS18340 Genome accession   NZ_CP142019
Coordinates   3873517..3874401 (+) Length   294 a.a.
NCBI ID   WP_000914779.1    Uniprot ID   A0A0Q1E5B1
Organism   Acinetobacter baumannii strain EMB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3868517..3879401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS18315 (VOI31_RS18325) - 3868915..3870162 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  DGAOKPDK_RS18320 (VOI31_RS18330) wrbA 3870450..3871043 (+) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  DGAOKPDK_RS18325 (VOI31_RS18335) - 3871096..3871671 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  DGAOKPDK_RS18330 (VOI31_RS18340) - 3871744..3872457 (-) 714 WP_272298082.1 DUF3108 domain-containing protein -
  DGAOKPDK_RS18335 (VOI31_RS18345) - 3872615..3873286 (-) 672 WP_001193960.1 hypothetical protein -
  DGAOKPDK_RS18340 (VOI31_RS18350) tonB2 3873517..3874401 (+) 885 WP_000914779.1 energy transducer TonB Machinery gene
  DGAOKPDK_RS18345 (VOI31_RS18355) ybeY 3874491..3874967 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  DGAOKPDK_RS18350 (VOI31_RS18360) - 3874977..3876065 (-) 1089 WP_000122983.1 PhoH family protein -
  DGAOKPDK_RS18355 (VOI31_RS18365) miaB 3876103..3877554 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33652.51 Da        Isoelectric Point: 9.0935

>NTDB_id=921092 DGAOKPDK_RS18340 WP_000914779.1 3873517..3874401(+) (tonB2) [Acinetobacter baumannii strain EMB-1]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPTPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=921092 DGAOKPDK_RS18340 WP_000914779.1 3873517..3874401(+) (tonB2) [Acinetobacter baumannii strain EMB-1]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAACGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAGCAATTACAAAGTCAGTTTCAGGCAAAGGCTGCCATGGTAGCGAGC
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q1E5B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997