Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L6432_RS07285 Genome accession   NZ_AP025339
Coordinates   1483736..1485466 (-) Length   576 a.a.
NCBI ID   WP_025811171.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J25TS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1478736..1490466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS07260 - 1479059..1479364 (-) 306 WP_020452124.1 membrane lipoprotein lipid attachment site-containing protein -
  L6432_RS07265 - 1479856..1480425 (-) 570 WP_023855161.1 serine O-acetyltransferase -
  L6432_RS07270 - 1480543..1480839 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  L6432_RS07275 spo0A 1481181..1481981 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  L6432_RS07280 spoIVB 1482271..1483521 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  L6432_RS07285 recN 1483736..1485466 (-) 1731 WP_025811171.1 DNA repair protein RecN Machinery gene
  L6432_RS07290 ahrC 1485498..1485947 (-) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  L6432_RS07295 - 1486111..1486956 (-) 846 WP_020452130.1 TlyA family RNA methyltransferase -
  L6432_RS07300 dxs 1486953..1488854 (-) 1902 WP_023855166.1 1-deoxy-D-xylulose-5-phosphate synthase -
  L6432_RS07305 - 1489087..1489977 (-) 891 WP_023855167.1 polyprenyl synthetase family protein -
  L6432_RS07310 - 1489967..1490227 (-) 261 WP_023855168.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64576.44 Da        Isoelectric Point: 4.8363

>NTDB_id=91312 L6432_RS07285 WP_025811171.1 1483736..1485466(-) (recN) [Bacillus paralicheniformis strain J25TS1]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIEHALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAKKLAKQIQQELKDLYMEKSTFDTEFQV
KKAERDDDAPVVNGMPVQLTKHGIDTVHFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLTKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=91312 L6432_RS07285 WP_025811171.1 1483736..1485466(-) (recN) [Bacillus paralicheniformis strain J25TS1]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
GACCGGTGAAACCGGGGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGCTCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGAGCCGAATTGGAAGGGCTTTTCCTCCTTGACAGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAACTCGGGATTGAAGCCTCGGATGACATGATCGTTATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATACACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGATGAGCACCATCTTCAGCTTCTGGACAGGTTTGCAGGAGAAGAAATCGAGCATGCTCTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGACGTCATGAAAAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGACTCGATTTAATACAGTTCCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGACGAACTTCTTC
AGGAAGAGCGCCGTCAAATCGCTAATTTCGAAAAAATATACGAAGCTCTGCAAAATGCCTATAATGCGCTACGCAACGAG
CAGGCTGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAGGGCTCAATAAAGT
ATCTGAATCTGTAGCCAACGCATACTACATTCTCGAAGATTCAACTTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGATTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGATATCCAAGCTTATTCGGCTAAGATAGAGGAAGAGATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCCCGCCTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGA
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATCTGTATATGGAAAAATCGACATTCGATACGGAATTCCAGGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGTATGCCGGTTCAGCTCACAAAGCACGGCATTGATACCGT
CCATTTCCTAATCTCAACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAGGTTGCATCTGGAGGAGAGCTGTCAAGAA
TCATGCTGGCCATGAAAAGCATTTTCTCTGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGATACGGGTGTA
AGCGGCAGAGTCGCGCAGGCGATCGCCGAAAAAATACACCGCGTCTCGATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCATCTTTTGATTACGAAACAGTCGAAAGACGGGAGAACGACGACAAGCGTCA
CACCGTTGACAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATCGCCGGAGTCGAAGTAACGGATCTGACGAAGCGC
CATGCGAAAGAACTTTTGAACCAAGCTAAGCTTGTTAAAACTACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.597

100

0.816

Multiple sequence alignment