Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI77_RS17920 Genome accession   NZ_CP139275
Coordinates   3777131..3777457 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain HCG138     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3772131..3782457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS17900 (SOI77_17900) - 3772231..3772857 (-) 627 WP_320561865.1 FHA domain-containing protein -
  SOI77_RS17905 (SOI77_17905) gspD 3772899..3775175 (-) 2277 WP_320561866.1 type II secretion system secretin GspD -
  SOI77_RS17910 (SOI77_17910) - 3775217..3776053 (-) 837 WP_005079413.1 type II secretion system protein N -
  SOI77_RS17915 (SOI77_17915) gspN 3776053..3776796 (-) 744 WP_204085767.1 type II secretion system protein N -
  SOI77_RS17920 (SOI77_17920) hns 3777131..3777457 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI77_RS17925 (SOI77_17925) - 3777652..3778092 (-) 441 WP_032052774.1 acyl-CoA thioesterase -
  SOI77_RS17930 (SOI77_17930) - 3778100..3779293 (-) 1194 WP_320561867.1 heme biosynthesis protein HemY -
  SOI77_RS17935 (SOI77_17935) - 3779303..3780145 (-) 843 WP_320561868.1 hypothetical protein -
  SOI77_RS17940 (SOI77_17940) hemD 3780154..3780921 (-) 768 WP_320561869.1 uroporphyrinogen-III synthase -
  SOI77_RS17945 (SOI77_17945) hemC 3780925..3781842 (-) 918 WP_032037675.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908634 SOI77_RS17920 WP_000801427.1 3777131..3777457(-) (hns) [Acinetobacter pittii strain HCG138]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908634 SOI77_RS17920 WP_000801427.1 3777131..3777457(-) (hns) [Acinetobacter pittii strain HCG138]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1