Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI73_RS06815 Genome accession   NZ_CP139262
Coordinates   1434809..1435189 (-) Length   126 a.a.
NCBI ID   WP_086376637.1    Uniprot ID   A0A8I1H4G2
Organism   Acinetobacter pittii strain HUM1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429809..1440189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI73_RS06785 (SOI73_06785) tadA 1429873..1430376 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  SOI73_RS06790 (SOI73_06790) hibch 1430382..1431506 (-) 1125 WP_320134481.1 enoyl-CoA hydratase/isomerase family protein -
  SOI73_RS06795 (SOI73_06795) ung 1431503..1432216 (-) 714 WP_002121342.1 uracil-DNA glycosylase -
  SOI73_RS06800 (SOI73_06800) - 1432270..1432866 (-) 597 WP_002121363.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI73_RS06805 (SOI73_06805) gspK 1433094..1434053 (-) 960 WP_005076277.1 type II secretion system minor pseudopilin GspK -
  SOI73_RS06810 (SOI73_06810) xcpW 1434054..1434809 (-) 756 WP_005069530.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI73_RS06815 (SOI73_06815) xcpV 1434809..1435189 (-) 381 WP_086376637.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI73_RS06820 (SOI73_06820) - 1435179..1435733 (-) 555 WP_005069534.1 type II secretion system protein -
  SOI73_RS06825 (SOI73_06825) - 1435740..1436348 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  SOI73_RS06830 (SOI73_06830) ycfH 1436385..1437158 (-) 774 WP_005069538.1 TatD family hydrolase -
  SOI73_RS06835 (SOI73_06835) pilZ 1437176..1437517 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  SOI73_RS06840 (SOI73_06840) holB 1437528..1438508 (-) 981 WP_196257291.1 DNA polymerase III subunit delta' -
  SOI73_RS06845 (SOI73_06845) kdsB 1438522..1439283 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13964.11 Da        Isoelectric Point: 9.4463

>NTDB_id=908459 SOI73_RS06815 WP_086376637.1 1434809..1435189(-) (xcpV) [Acinetobacter pittii strain HUM1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSTQSTISPNVQKVDVQVSLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908459 SOI73_RS06815 WP_086376637.1 1434809..1435189(-) (xcpV) [Acinetobacter pittii strain HUM1]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCAATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAGTTG
CTTTAATGGAAATAAATCAGGAATGGCTCGAAGGTACACAAAGCAAGCAAGTGACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCTACGCAATCTACAATTAGTCCAAATGTTCAAAAAGTAGATGTACAAGTTAGTTTATATGATTCTGATAAGGG
GAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTACCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-102)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937