Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   SON02_RS05610 Genome accession   NZ_CP139211
Coordinates   1315433..1315867 (-) Length   144 a.a.
NCBI ID   WP_135027179.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1310433..1320867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS05585 (SON02_05570) - 1311107..1311634 (-) 528 WP_135027213.1 ECF transporter S component -
  SON02_RS05590 (SON02_05575) - 1311634..1312491 (-) 858 WP_135027171.1 pyridoxamine kinase -
  SON02_RS05595 (SON02_05580) - 1312811..1314001 (-) 1191 WP_135027173.1 acetate kinase -
  SON02_RS05600 (SON02_05585) comYH 1314051..1315004 (-) 954 WP_135027174.1 class I SAM-dependent methyltransferase Machinery gene
  SON02_RS05605 (SON02_05590) comGG 1315027..1315422 (-) 396 WP_135027176.1 competence type IV pilus minor pilin ComGG -
  SON02_RS05610 (SON02_05595) comYF 1315433..1315867 (-) 435 WP_135027179.1 competence type IV pilus minor pilin ComGF Machinery gene
  SON02_RS05615 (SON02_05600) comGE 1315854..1316108 (-) 255 WP_228063764.1 competence type IV pilus minor pilin ComGE -
  SON02_RS05620 (SON02_05605) comGD 1316119..1316496 (-) 378 WP_373273837.1 competence type IV pilus minor pilin ComGD -
  SON02_RS05625 (SON02_05610) comGC/cglC 1316507..1316821 (-) 315 WP_135027183.1 competence type IV pilus major pilin ComGC Machinery gene
  SON02_RS05630 (SON02_05615) comYB 1316823..1317851 (-) 1029 WP_135027184.1 competence type IV pilus assembly protein ComGB Machinery gene
  SON02_RS05635 (SON02_05620) comGA/cglA/cilD 1317772..1318722 (-) 951 WP_135027186.1 competence type IV pilus ATPase ComGA Machinery gene
  SON02_RS05640 (SON02_05625) - 1318892..1319254 (-) 363 WP_135027188.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16831.50 Da        Isoelectric Point: 9.5304

>NTDB_id=908055 SON02_RS05610 WP_135027179.1 1315433..1315867(-) (comYF) [Streptococcus sp. LysM4]
MKKSKMPAFSLLECLVALLVLSGSLLVFDGLAKLIRHEMLYQETSVEKKWLVFADQLRYELDGTRFIKVEHDHLYVDKSG
HRLSFGKSKADDFRKTNDKGQGYQPMLYQVASAKIRREKAFVQIDITFDNGWEKSFVYRFEEKV

Nucleotide


Download         Length: 435 bp        

>NTDB_id=908055 SON02_RS05610 WP_135027179.1 1315433..1315867(-) (comYF) [Streptococcus sp. LysM4]
TTGAAAAAGAGTAAGATGCCAGCTTTTTCCCTACTTGAATGTCTAGTAGCTCTGCTTGTCTTATCAGGAAGTCTACTAGT
ATTTGATGGTCTAGCGAAATTAATCCGCCATGAAATGCTTTATCAGGAAACGAGTGTTGAAAAGAAGTGGCTTGTTTTTG
CGGACCAACTGCGCTATGAGTTGGACGGGACTCGTTTCATTAAGGTGGAACATGATCATCTGTATGTTGATAAATCTGGT
CATCGACTGTCTTTTGGTAAATCAAAAGCAGATGATTTCCGTAAAACAAATGATAAGGGGCAGGGATATCAACCCATGTT
ATATCAGGTTGCTTCCGCTAAAATCCGACGAGAAAAAGCCTTTGTACAGATTGATATCACCTTTGATAATGGTTGGGAGA
AAAGTTTTGTTTATCGTTTTGAAGAAAAAGTGTAG

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

48.951

99.306

0.486
  comGF Lactococcus lactis subsp. cremoris KW2

49.286

97.222

0.479
  comYF Streptococcus mutans UA159

48.252

99.306

0.479
  comGF/cglF Streptococcus mitis NCTC 12261

48.571

97.222

0.472
  comGF/cglF Streptococcus pneumoniae TIGR4

46.479

98.611

0.458
  comGF/cglF Streptococcus pneumoniae R6

46.479

98.611

0.458
  comGF/cglF Streptococcus pneumoniae D39

46.479

98.611

0.458
  comGF/cglF Streptococcus pneumoniae Rx1

46.479

98.611

0.458
  comGF/cglF Streptococcus mitis SK321

46.429

97.222

0.451