Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SK061_RS15320 Genome accession   NZ_CP139190
Coordinates   2979616..2981346 (-) Length   576 a.a.
NCBI ID   WP_006637492.1    Uniprot ID   A0A7Y8V1C6
Organism   Bacillus sonorensis strain PMC204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2974616..2986346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK061_RS15295 (SK061_15295) - 2974788..2975132 (-) 345 WP_006637487.1 DUF1433 domain-containing protein -
  SK061_RS15300 (SK061_15300) - 2975183..2976622 (+) 1440 WP_006637488.1 hypothetical protein -
  SK061_RS15305 (SK061_15305) - 2976634..2976945 (+) 312 WP_006637489.1 hypothetical protein -
  SK061_RS15310 (SK061_15310) spo0A 2977029..2977829 (-) 801 WP_006637490.1 sporulation transcription factor Spo0A Regulator
  SK061_RS15315 (SK061_15315) spoIVB 2978119..2979435 (-) 1317 WP_051056677.1 SpoIVB peptidase -
  SK061_RS15320 (SK061_15320) recN 2979616..2981346 (-) 1731 WP_006637492.1 DNA repair protein RecN Machinery gene
  SK061_RS15325 (SK061_15325) ahrC 2981376..2981825 (-) 450 WP_006637493.1 transcriptional regulator AhrC/ArgR -
  SK061_RS15330 (SK061_15330) - 2981932..2982777 (-) 846 WP_006637494.1 TlyA family RNA methyltransferase -
  SK061_RS15335 (SK061_15335) dxs 2982774..2984675 (-) 1902 WP_006637495.1 1-deoxy-D-xylulose-5-phosphate synthase -
  SK061_RS15340 (SK061_15340) - 2984930..2985820 (-) 891 WP_006637496.1 polyprenyl synthetase family protein -
  SK061_RS15345 (SK061_15345) - 2985810..2986070 (-) 261 WP_006637497.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64331.17 Da        Isoelectric Point: 4.8195

>NTDB_id=907732 SK061_RS15320 WP_006637492.1 2979616..2981346(-) (recN) [Bacillus sonorensis strain PMC204]
MLAELSIKNFAIIEELTISFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
GELGIDASDEMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDDHHLQLLDRYAGEEIEKALK
AYQEVYSCYMNVMKKVKQLSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLEEERRQISNFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINDGLKKISESVANAYYILEDSTFQIRNMLDDLEYDPARLDFIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIQNRDSHLQALKEELESVGKDVAIEAMNVSDIRKSWAKKLANQIQQELKELYMGKSTFDTEFQL
KTADAREEAPVVNGTPVHLTKQGIDSVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKISEIGRMIAGVEVTDLTKR
HAKELLHQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=907732 SK061_RS15320 WP_006637492.1 2979616..2981346(-) (recN) [Bacillus sonorensis strain PMC204]
TTGTTAGCTGAATTATCGATTAAGAACTTTGCGATTATCGAAGAACTAACCATTTCTTTTGAAAAAGGGCTGACGGTGTT
AACCGGCGAAACCGGGGCCGGAAAATCGATCATCATCGATGCCATCTCTTTGCTTGTGGGCGGAAGAGGTTCATCCGAAT
ATGTCAGATATGGAGAAAAAAGAGCCGAATTAGAAGGGCTTTTTCTGCTGGACAGCGGGCATCCGGTCTTCGATCTGTGC
GGAGAGCTTGGCATCGACGCTTCTGACGAGATGATCGTCATGAGACGGGATATCAATGCAAACGGCAAAAGCATCTGCCG
TGTAAATGGCAAGCTTGTGACGATTGCCGCTTTGCGGGAGGTCGGCAGGCTTCTGCTTGATATCCACGGTCAGCACGATA
ACCAGCTGCTAATGGAAGACGACCATCATCTTCAGCTTTTGGACCGGTACGCCGGCGAGGAAATCGAAAAAGCGCTGAAA
GCCTACCAGGAAGTTTACAGCTGCTATATGAACGTCATGAAAAAGGTGAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACAGACTTGATTTGATTCAGTTTCAGCTTGATGAAATCGAATCCGCAAACCTCGAGCCCAAAGAGGACGAGCTTTTGG
AGGAAGAGCGCCGGCAGATTTCAAACTTTGAGAAAATATATGAAGCTTTGCAAAATGCCTATAACGCGCTTCGCAACGAA
CAGGCCGGACTCGATTGGGTCGGGATGGCATCAAGCGAGCTGGAGAATGTCTCCGGCATCAATGACGGACTGAAAAAGAT
ATCTGAATCTGTTGCCAACGCTTACTATATTTTGGAGGATTCAACCTTTCAAATCAGAAACATGCTGGACGACTTGGAAT
ACGATCCGGCACGGCTCGATTTCATTGAATCCAGATTGAACGAAATCAAACAATTGAAGCGAAAATACGGCGCCACTGTT
GAAGATATACAGGCATATTCCGCGAAAATCGAGGAAGAAATCGATCGTATCCAAAACCGTGACAGCCATCTGCAGGCATT
AAAAGAGGAGCTCGAATCAGTCGGCAAAGATGTCGCGATCGAAGCGATGAATGTGTCAGATATCCGAAAATCATGGGCGA
AAAAACTTGCCAACCAGATTCAGCAGGAACTAAAAGAGCTCTATATGGGAAAATCGACGTTCGATACCGAATTCCAACTG
AAAACGGCAGATGCCCGCGAAGAAGCACCTGTCGTGAACGGAACCCCTGTTCATCTGACAAAGCAGGGGATTGACAGCGT
CCGCTTTTTAATTTCGACCAATACCGGCGAACCGCTGAAATCCTTGTCAAAAGTCGCTTCAGGCGGCGAATTGTCAAGAA
TTATGCTGGCGATGAAAAGCATTTTCTCCGCGCAGCAGGACGTCACATCGATCATTTTTGACGAAGTGGACACCGGGGTG
AGCGGGAGAGTGGCGCAGGCGATCGCCGAGAAAATCCACCGCGTATCGATCGGCTCCCAAGTGCTGTGCATCACCCATTT
GCCGCAAGTAGCGGCAATGGCGGACACGCATCTTTTAATTACAAAACAGTCCAAGGACGGACGAACGACAACAAGCGTCA
CACCATTGTCAAAACAGGAAAAAATATCGGAAATCGGCCGGATGATTGCCGGCGTCGAAGTGACAGATCTGACGAAGCGC
CATGCAAAGGAGCTTTTGCATCAGGCCAAACTCGTCAAAACCACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8V1C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.076

100

0.811