Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   SIS06_RS08110 Genome accession   NZ_CP139188
Coordinates   1511684..1512268 (+) Length   194 a.a.
NCBI ID   WP_283934323.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506684..1517268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS08080 (SIS06_08080) dapD 1506871..1507581 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SIS06_RS08085 (SIS06_08085) dapI 1507651..1508775 (+) 1125 WP_021479383.1 N-acetyldiaminopimelate deacetylase -
  SIS06_RS08090 (SIS06_08090) ykuS 1508837..1509082 (+) 246 WP_003232382.1 YkuS family protein -
  SIS06_RS08095 (SIS06_08095) mscT 1509119..1509922 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  SIS06_RS08100 (SIS06_08100) ahpA 1510159..1510701 (+) 543 WP_283934321.1 biofilm-specific peroxidase AhpA -
  SIS06_RS08105 (SIS06_08105) ykuV 1510772..1511218 (+) 447 WP_283934322.1 thiol-disulfide oxidoreductase YkuV -
  SIS06_RS08110 (SIS06_08110) rok 1511684..1512268 (+) 585 WP_283934323.1 transcriptional regulator Rok Regulator
  SIS06_RS08115 (SIS06_08115) cse15 1512309..1513274 (-) 966 WP_021479381.1 spore protein Cse15 -
  SIS06_RS08120 (SIS06_08120) mobA 1513411..1514010 (+) 600 WP_283934324.1 molybdenum cofactor guanylyltransferase -
  SIS06_RS08125 (SIS06_08125) moeB 1514061..1515080 (+) 1020 WP_283934325.1 molybdopterin-synthase adenylyltransferase MoeB -
  SIS06_RS08130 (SIS06_08130) glp 1515098..1516390 (+) 1293 WP_273797361.1 gephyrin-like molybdotransferase Glp -
  SIS06_RS08135 (SIS06_08135) mobB 1516351..1516872 (+) 522 WP_049139878.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22171.13 Da        Isoelectric Point: 9.4946

>NTDB_id=907623 SIS06_RS08110 WP_283934323.1 1511684..1512268(+) (rok) [Bacillus subtilis strain H17-16]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESDESANE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=907623 SIS06_RS08110 WP_283934323.1 1511684..1512268(+) (rok) [Bacillus subtilis strain H17-16]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCGAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAACCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGATGAATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

98.454

100

0.985