Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   SH592_RS14780 Genome accession   NZ_CP139053
Coordinates   3029063..3029203 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain Y-4     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3024063..3034203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH592_RS14755 (SH592_14755) - 3024360..3024743 (-) 384 WP_040238946.1 hotdog fold thioesterase -
  SH592_RS14760 (SH592_14760) comA 3024765..3025409 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  SH592_RS14765 (SH592_14765) comP 3025490..3027793 (-) 2304 WP_040238945.1 histidine kinase Regulator
  SH592_RS14775 (SH592_14775) comQ 3027946..3028932 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  SH592_RS14780 (SH592_14780) degQ 3029063..3029203 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  SH592_RS14785 (SH592_14785) - 3029666..3030007 (+) 342 WP_015418107.1 hypothetical protein -
  SH592_RS14790 (SH592_14790) - 3030014..3031237 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  SH592_RS14795 (SH592_14795) - 3031367..3032833 (-) 1467 WP_015418109.1 nicotinate phosphoribosyltransferase -
  SH592_RS14800 (SH592_14800) - 3032851..3033402 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  SH592_RS14805 (SH592_14805) - 3033499..3033897 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=907052 SH592_RS14780 WP_003152043.1 3029063..3029203(-) (degQ) [Bacillus velezensis strain Y-4]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=907052 SH592_RS14780 WP_003152043.1 3029063..3029203(-) (degQ) [Bacillus velezensis strain Y-4]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterProScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891