Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SE116_RS07625 Genome accession   NZ_CP138362
Coordinates   1606008..1606694 (-) Length   228 a.a.
NCBI ID   WP_078370367.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V315     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1601008..1611694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS07605 (SE116_07605) rpsT 1601922..1602173 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SE116_RS07610 (SE116_07610) holA 1602218..1603192 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  SE116_RS07615 (SE116_07615) comEC 1603249..1605450 (-) 2202 WP_041204299.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SE116_RS07620 (SE116_07620) - 1605455..1605916 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SE116_RS07625 (SE116_07625) comEA 1606008..1606694 (-) 687 WP_078370367.1 ComEA family DNA-binding protein Machinery gene
  SE116_RS07630 (SE116_07630) - 1606734..1607450 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  SE116_RS07635 (SE116_07635) rsfS 1607453..1607806 (-) 354 WP_001088020.1 ribosome silencing factor -
  SE116_RS07640 (SE116_07640) yqeK 1607807..1608391 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SE116_RS07645 (SE116_07645) nadD 1608381..1608950 (-) 570 WP_000725163.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SE116_RS07650 (SE116_07650) yhbY 1608953..1609243 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  SE116_RS07655 (SE116_07655) aroE 1609247..1610053 (-) 807 WP_000666764.1 shikimate dehydrogenase -
  SE116_RS07660 (SE116_07660) yqeH 1610067..1611167 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25691.46 Da        Isoelectric Point: 9.5413

>NTDB_id=902165 SE116_RS07625 WP_078370367.1 1606008..1606694(-) (comEA) [Staphylococcus aureus strain V315]
MVLLYQFLLRYKDFLTQCKLYIISAVVLIMVLIGFIFWRQDDYTTRNFENKDTALKQSTSEISSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=902165 SE116_RS07625 WP_078370367.1 1606008..1606694(-) (comEA) [Staphylococcus aureus strain V315]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGCAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTACAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969
  comEA Staphylococcus aureus N315

97.357

99.561

0.969