Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R2B60_RS04870 Genome accession   NZ_CP137532
Coordinates   1161407..1162465 (+) Length   352 a.a.
NCBI ID   WP_042773967.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria strain XpT39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1156407..1167465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B60_RS04860 (R2B60_04860) - 1157808..1158458 (-) 651 WP_011348460.1 hypothetical protein -
  R2B60_RS04865 (R2B60_04865) - 1158767..1161289 (-) 2523 WP_109291056.1 penicillin-binding protein 1A -
  R2B60_RS04870 (R2B60_04870) comM 1161407..1162465 (+) 1059 WP_042773967.1 pilus assembly protein PilM Machinery gene
  R2B60_RS04875 (R2B60_04875) - 1162465..1163247 (+) 783 WP_011348457.1 PilN domain-containing protein -
  R2B60_RS04880 (R2B60_04880) - 1163244..1163909 (+) 666 WP_008575845.1 type 4a pilus biogenesis protein PilO -
  R2B60_RS04885 (R2B60_04885) - 1163906..1164439 (+) 534 WP_007974439.1 pilus assembly protein PilP -
  R2B60_RS04890 (R2B60_04890) - 1164459..1166408 (+) 1950 WP_011348456.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37579.19 Da        Isoelectric Point: 4.3924

>NTDB_id=898922 R2B60_RS04870 WP_042773967.1 1161407..1162465(+) (comM) [Xanthomonas euvesicatoria strain XpT39]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPSSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=898922 R2B60_RS04870 WP_042773967.1 1161407..1162465(+) (comM) [Xanthomonas euvesicatoria strain XpT39]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGGCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCT
GTCGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAGCA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGTTTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCGCTGGTTGCCAGCGAATTGCCGGT
GGCTGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGTGGCCTGCCGGAAAGTTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACTGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50.857

99.432

0.506
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472