Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R5U34_RS08475 Genome accession   NZ_CP137465
Coordinates   1746918..1748600 (-) Length   560 a.a.
NCBI ID   WP_002324427.1    Uniprot ID   A0AB37VYD6
Organism   Enterococcus faecium strain AD21B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1741918..1753600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5U34_RS08445 (R5U34_08445) ftsL 1743192..1743593 (-) 402 WP_002294542.1 cell division protein FtsL -
  R5U34_RS08450 (R5U34_08450) rsmH 1743598..1744557 (-) 960 WP_139910081.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  R5U34_RS08455 (R5U34_08455) mraZ 1744578..1745009 (-) 432 WP_104775420.1 division/cell wall cluster transcriptional repressor MraZ -
  R5U34_RS08460 (R5U34_08460) - 1745179..1745547 (-) 369 WP_002286647.1 DUF3397 domain-containing protein -
  R5U34_RS08465 (R5U34_08465) - 1745718..1746674 (+) 957 WP_002324426.1 magnesium transporter CorA family protein -
  R5U34_RS08470 (R5U34_08470) - 1746747..1746863 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  R5U34_RS08475 (R5U34_08475) recN 1746918..1748600 (-) 1683 WP_002324427.1 DNA repair protein RecN Machinery gene
  R5U34_RS08480 (R5U34_08480) - 1748618..1749067 (-) 450 WP_002286653.1 arginine repressor -
  R5U34_RS08485 (R5U34_08485) - 1749174..1749992 (-) 819 WP_002286655.1 TlyA family RNA methyltransferase -
  R5U34_RS08490 (R5U34_08490) - 1750001..1750891 (-) 891 WP_002324428.1 polyprenyl synthetase family protein -
  R5U34_RS08495 (R5U34_08495) - 1750893..1751117 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  R5U34_RS08500 (R5U34_08500) xseA 1751122..1752459 (-) 1338 WP_002326489.1 exodeoxyribonuclease VII large subunit -
  R5U34_RS08505 (R5U34_08505) - 1752460..1753314 (-) 855 WP_002324430.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63367.79 Da        Isoelectric Point: 4.6049

>NTDB_id=898088 R5U34_RS08475 WP_002324427.1 1746918..1748600(-) (recN) [Enterococcus faecium strain AD21B]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCVLEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRRIGSYLVDIQGQNEHQELLQSESHLALLDRFGDVAFQQKKK
SYQQEYISYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVSELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDESRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLKLAKRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=898088 R5U34_RS08475 WP_002324427.1 1746918..1748600(-) (recN) [Enterococcus faecium strain AD21B]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATTATTATCGATGCTTTAGGTCTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGAGCAGAAAAATGCGTGCTTGAAGGGTTGTTTGAACTACCAAAACAAGAAGGATTCTCTGAACTGATG
GTTGAATTAGGGATCGAAACAGATGAGGACAATCTGATTGTTCGACGGGATATGTCCTTAACTGGAAAAAATGTTTGTCG
AGTGAATGGTCATATCATCACATTAGCTAATTTAAGAAGAATCGGCAGTTATTTAGTAGATATCCAAGGACAAAACGAAC
ATCAGGAACTGCTCCAGTCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGTAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATATCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGTTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGTGTTGGCTTGGCCGTTTCAGAGCTGCAAGGGATCGCCCATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGCTGCAAGATGCAATCGGCGATATGAGTCGTCAGATTGATTTATTGG
AGTTAGATGAGAGTCGTTTAGAAGAAGTTACGCAACGTTTAGAATTAATCCGACAGTTGAAACGTAAATACGGCGAATCT
ATTGAGTCAATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTGAAAAGTCTGTATATGGAAAACACTGAGTTTGAGGTACGTTTCTTA
AAAGAAGAAAATAGACAATTGAATCATGATGGATTTGACCAAATCGAATTTTACATTACGACCAATCCAGGAGAACCACT
GAAGCCTTTGGTGAAAGTCGCTTCTGGTGGCGAACTGTCTCGGATGTTGCTTGCTTTGAAAACTATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATTTTTGATGAAGTGGATACAGGTGTGAGCGGAAGAGTTGCACAAGCCATCGCAGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTGCCTCAAGTTGCTGCAGTCGCCGACTATCAATATTA
TATTGTGAAAGCAGTGATTGATGGACGTACGCAAACTTCTGTTTCAGAGTTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGTATGCTGGCTGGAAGTGAGATTACAAAACTCACACTCGAACATGCAAAAGAACTATTGAAACTCGCAAAAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.5