Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RYQ61_RS07095 Genome accession   NZ_CP136799
Coordinates   1367963..1369765 (+) Length   600 a.a.
NCBI ID   WP_102567738.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362963..1374765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS07075 (RYQ61_07075) - 1364149..1365318 (+) 1170 WP_317289672.1 MFS transporter -
  RYQ61_RS07080 (RYQ61_07080) - 1365615..1366601 (+) 987 Protein_1349 6-phospho-beta-glucosidase -
  RYQ61_RS07085 (RYQ61_07085) celB 1366595..1366891 (+) 297 Protein_1350 PTS cellobiose transporter subunit IIC -
  RYQ61_RS07090 (RYQ61_07090) coiA 1366980..1368011 (+) 1032 WP_102567739.1 competence protein CoiA Machinery gene
  RYQ61_RS07095 (RYQ61_07095) pepF 1367963..1369765 (+) 1803 WP_102567738.1 oligoendopeptidase F Regulator
  RYQ61_RS07100 (RYQ61_07100) - 1369767..1370459 (+) 693 WP_117276021.1 O-methyltransferase -
  RYQ61_RS07105 (RYQ61_07105) prsA 1370557..1371495 (+) 939 WP_003073287.1 peptidylprolyl isomerase PrsA -
  RYQ61_RS07110 (RYQ61_07110) - 1371720..1372205 (+) 486 WP_117276022.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69282.58 Da        Isoelectric Point: 4.6883

>NTDB_id=892739 RYQ61_RS07095 WP_102567738.1 1367963..1369765(+) (pepF) [Streptococcus intermedius strain XH2169]
MAKQRNEIEEKYTWDLTTIFPTDEAFEMELAQVSKELKEASHLAGHLLDSADSLLKTTAIQMDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQVFAFYEPEFMAITDEQYQAFLAEKPELQVYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPIVHDEEGNEVQLTHGNYISLVEAKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPENVYESLVSAVNKHLPLLHRYVQLRAKILGISDLKMYDVYTPLSEVDYKFTYEAALT
KAEEVLAILGDDYLNRVKKAFSERWIDVCENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKSDQEGQVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYATGFSAASALADKIVNGTQEDKEKYLHYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=892739 RYQ61_RS07095 WP_102567738.1 1367963..1369765(+) (pepF) [Streptococcus intermedius strain XH2169]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTAACAACGATTTTCCCAACAGATGAAGCGTTTGA
AATGGAATTAGCGCAAGTTTCAAAGGAATTAAAAGAAGCTAGTCATTTAGCAGGTCATCTTTTGGATTCAGCCGATAGCC
TTTTAAAAACGACAGCCATCCAAATGGATTTAATGCGTCGCATTGAAAAGCTCTATTCTTATGCTCACATGAAAAATGAC
CAAGATACGCGTGTGGCAAAATATCAAGAGTATCAAGCTAAGGGCATGGCTATTTATAGCGAGTTCGGGCAGGTGTTTGC
TTTCTATGAGCCAGAATTTATGGCAATTACAGATGAACAGTACCAGGCTTTCTTAGCTGAAAAACCTGAATTGCAAGTCT
ATCAGCACTTCTTTGACAAGTTATTGCAAAAGAAACCTCACATCCTTTCTCAACGTGAGGAAGAATTGTTGGCAGGTGCT
GGTGAAATTTTTAGTGCTGCTGGTGATACTTTTGGAATTTTGGATAATGCCGATATCGTCTTTCCAATTGTACATGACGA
AGAAGGCAATGAAGTACAATTAACGCATGGAAATTACATTAGCTTAGTGGAGGCAAAAAATCGTACAGTCCGTAAGGAAG
CTTATGAAGCACTTTATAGTGTTTATGAGCAATATCAACATACTTATGCTAAGACACTTCAAACAAATGTTAAAGTGCAT
AATTACAACGCAAAAGTACGTAAGTTTTCTTCAGCACGCGAAGCAGCCTTGTCTGCTAACTTTATTCCAGAAAATGTTTA
TGAGAGTTTGGTGTCTGCAGTCAACAAACATTTACCACTCTTACATCGCTATGTTCAGTTACGAGCTAAGATTTTAGGCA
TTTCAGATCTCAAGATGTATGACGTTTATACACCGCTATCAGAGGTAGATTATAAATTTACCTATGAAGCAGCTTTGACG
AAAGCGGAAGAAGTTTTAGCAATTCTTGGAGATGATTATCTTAACCGAGTGAAAAAAGCCTTTTCAGAGCGTTGGATTGA
TGTTTGTGAGAATCAAGGTAAACGGTCAGGAGCTTATTCTGGTGGCTCTTACGATACTAATGCTTTTATGTTGCTGAATT
GGCAAGATACCTTAGATAATCTCTTCACCTTGGTTCATGAAACGGGTCATAGTATGCATTCTAGCTATACTCGTGAAACA
CAGCCTTATGTTTATGGTGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACTACCAATGAAAATATACTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACTCGTTTTGCGATTCTGAATCATTTCTTGGATGGCTTCCGCGGAACTGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAGCATGCTATCCATAAGTCTGATCAAGAAGGTCAAGTCTTAACTAGTGAATTT
TTGAATGATTTATACGCAGATTTGAACGAAAAATATTATGGCTTGACGAAAGAAGATAATCCACAAATTCAATATGAATG
GGCACGGATTCCGCATTTTTACTATGACTATTATGTATTTCAATATGCGACTGGTTTTTCAGCAGCATCTGCTTTAGCTG
ATAAAATTGTCAATGGAACACAAGAAGATAAAGAGAAATATCTCCATTATCTCAAAGCAGGAAATTCTGATTATCCGCTG
AATGTCATTAAAAAAGCTGGTGTTGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTTGTAGAAAAGTTAGGCTTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.456

99.333

0.68