Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCV11_RS10360 Genome accession   NZ_AP024895
Coordinates   2276812..2278239 (+) Length   475 a.a.
NCBI ID   WP_261896273.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2225071..2278696 2276812..2278239 within 0


Gene organization within MGE regions


Location: 2225071..2278696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS10015 - 2225071..2226108 (-) 1038 WP_261892719.1 reverse transcriptase/maturase family protein -
  OCV11_RS10020 avd 2226379..2226726 (-) 348 WP_315972731.1 diversity-generating retroelement protein Avd -
  OCV11_RS10025 - 2226768..2228156 (-) 1389 WP_261892721.1 hypothetical protein -
  OCV11_RS10030 - 2228149..2228355 (-) 207 WP_261892722.1 hypothetical protein -
  OCV11_RS10035 - 2228355..2229029 (-) 675 WP_261892723.1 DUF6453 family protein -
  OCV11_RS10040 - 2229340..2234655 (-) 5316 WP_261892724.1 DUF1983 domain-containing protein -
  OCV11_RS10045 - 2234667..2235272 (-) 606 WP_261892725.1 tail assembly protein -
  OCV11_RS10050 - 2235283..2236053 (-) 771 WP_261896271.1 C40 family peptidase -
  OCV11_RS10055 - 2236150..2236896 (-) 747 WP_261892726.1 phage minor tail protein L -
  OCV11_RS10060 - 2236905..2237243 (-) 339 WP_261892727.1 phage tail protein -
  OCV11_RS10065 - 2237244..2240546 (-) 3303 WP_261892728.1 phage tail tape measure protein -
  OCV11_RS10070 - 2240582..2240782 (-) 201 WP_261892729.1 hypothetical protein -
  OCV11_RS10075 - 2240839..2241285 (-) 447 WP_261892730.1 phage tail assembly chaperone family protein, TAC -
  OCV11_RS10080 - 2241301..2241783 (-) 483 WP_261892731.1 phage tail tube protein -
  OCV11_RS10085 - 2241858..2242229 (-) 372 WP_261892732.1 DUF3168 domain-containing protein -
  OCV11_RS10090 - 2242226..2242690 (-) 465 WP_261892733.1 HK97-gp10 family putative phage morphogenesis protein -
  OCV11_RS10095 - 2242697..2243059 (-) 363 WP_261892734.1 head-tail adaptor protein -
  OCV11_RS10100 - 2243059..2243382 (-) 324 WP_261892735.1 head-tail connector protein -
  OCV11_RS10105 - 2243369..2243797 (-) 429 WP_261892736.1 hypothetical protein -
  OCV11_RS10110 - 2243827..2244111 (-) 285 WP_261892737.1 hypothetical protein -
  OCV11_RS10115 - 2244169..2245365 (-) 1197 WP_261892738.1 phage major capsid protein -
  OCV11_RS10120 - 2245352..2246257 (-) 906 WP_261892739.1 head maturation protease, ClpP-related -
  OCV11_RS10125 - 2246260..2247585 (-) 1326 WP_261892740.1 phage portal protein -
  OCV11_RS10130 - 2247778..2249490 (-) 1713 WP_261892741.1 terminase large subunit -
  OCV11_RS10135 - 2249487..2249963 (-) 477 WP_261892742.1 phage terminase small subunit P27 family -
  OCV11_RS10140 - 2249971..2250330 (-) 360 WP_261892743.1 HNH endonuclease -
  OCV11_RS10145 - 2250330..2250635 (-) 306 WP_261892744.1 hypothetical protein -
  OCV11_RS10150 - 2250921..2251133 (-) 213 WP_261892745.1 hypothetical protein -
  OCV11_RS10155 - 2251473..2251667 (-) 195 WP_261892746.1 hypothetical protein -
  OCV11_RS10160 - 2251672..2252148 (-) 477 WP_261892747.1 lysis protein -
  OCV11_RS10165 - 2252127..2252549 (-) 423 WP_390903397.1 glycoside hydrolase family protein -
  OCV11_RS10170 - 2252600..2252791 (-) 192 WP_261892749.1 phage holin family protein -
  OCV11_RS10175 - 2252902..2253585 (-) 684 WP_261892750.1 hypothetical protein -
  OCV11_RS10180 - 2253701..2253925 (-) 225 WP_261892751.1 hypothetical protein -
  OCV11_RS10185 - 2253934..2254944 (-) 1011 WP_261896272.1 DUF968 domain-containing protein -
  OCV11_RS10190 - 2254963..2255154 (-) 192 WP_261892752.1 helix-turn-helix domain-containing protein -
  OCV11_RS10195 - 2255216..2255704 (-) 489 WP_261892753.1 hypothetical protein -
  OCV11_RS10200 - 2255701..2255985 (-) 285 WP_261892754.1 hypothetical protein -
  OCV11_RS10205 - 2256363..2257220 (-) 858 WP_261892755.1 phage antirepressor KilAC domain-containing protein -
  OCV11_RS10210 - 2257274..2257978 (-) 705 WP_261892756.1 replication protein P -
  OCV11_RS10215 - 2257962..2258753 (-) 792 WP_261892757.1 helix-turn-helix domain-containing protein -
  OCV11_RS10220 - 2258753..2259037 (-) 285 WP_261892758.1 hypothetical protein -
  OCV11_RS10225 - 2259039..2259737 (-) 699 WP_261892759.1 phage N-6-adenine-methyltransferase -
  OCV11_RS10230 - 2260227..2260691 (+) 465 WP_261892760.1 hypothetical protein -
  OCV11_RS10235 - 2260774..2261220 (-) 447 WP_261892761.1 YmfL family putative regulatory protein -
  OCV11_RS10240 - 2261249..2261476 (-) 228 WP_261892762.1 helix-turn-helix transcriptional regulator -
  OCV11_RS10245 - 2261579..2262301 (+) 723 WP_261892763.1 helix-turn-helix transcriptional regulator -
  OCV11_RS10250 - 2262320..2262895 (+) 576 WP_261892764.1 BRCT domain-containing protein -
  OCV11_RS10255 - 2262905..2263315 (+) 411 WP_261892765.1 DUF2846 domain-containing protein -
  OCV11_RS10260 - 2263463..2263984 (+) 522 WP_261892766.1 Ail/Lom family outer membrane beta-barrel protein -
  OCV11_RS10265 - 2265477..2265668 (+) 192 WP_261892767.1 hypothetical protein -
  OCV11_RS10270 - 2265661..2265804 (+) 144 WP_261892768.1 hypothetical protein -
  OCV11_RS10275 yejK 2265816..2266823 (+) 1008 WP_261892769.1 nucleoid-associated protein YejK -
  OCV11_RS10280 - 2266823..2267074 (+) 252 WP_261892770.1 adhesin biosynthesis transcription regulatory family protein -
  OCV11_RS10285 - 2267138..2267860 (+) 723 WP_261892771.1 hypothetical protein -
  OCV11_RS10290 - 2267885..2268097 (+) 213 WP_261892772.1 hypothetical protein -
  OCV11_RS10295 - 2268106..2268375 (+) 270 WP_261892773.1 hypothetical protein -
  OCV11_RS10300 - 2268500..2268940 (+) 441 WP_261892774.1 hypothetical protein -
  OCV11_RS10305 - 2268930..2269610 (+) 681 WP_261892775.1 hypothetical protein -
  OCV11_RS10310 - 2269600..2270430 (+) 831 WP_261892776.1 DNA adenine methylase -
  OCV11_RS10315 - 2270423..2270806 (+) 384 WP_261892777.1 hypothetical protein -
  OCV11_RS10320 - 2270856..2271365 (+) 510 WP_261892778.1 hypothetical protein -
  OCV11_RS10325 - 2271368..2271646 (+) 279 WP_261892779.1 hypothetical protein -
  OCV11_RS10330 - 2271719..2273782 (+) 2064 WP_261892780.1 SNF2-related protein -
  OCV11_RS10335 - 2273825..2274112 (+) 288 WP_261892781.1 AlpA family transcriptional regulator -
  OCV11_RS10340 - 2274115..2274432 (+) 318 WP_261892782.1 hypothetical protein -
  OCV11_RS10345 - 2274689..2274901 (+) 213 WP_261892783.1 hypothetical protein -
  OCV11_RS10350 - 2274894..2275469 (+) 576 WP_261892784.1 3'-5' exoribonuclease domain-containing protein -
  OCV11_RS10355 - 2275466..2276638 (-) 1173 WP_261892785.1 site-specific integrase -
  OCV11_RS10360 sbcB 2276812..2278239 (+) 1428 WP_261896273.1 exodeoxyribonuclease I Machinery gene
  OCV11_RS10365 - 2278274..2278696 (+) 423 WP_261892786.1 CidA/LrgA family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54695.90 Da        Isoelectric Point: 5.0261

>NTDB_id=89249 OCV11_RS10360 WP_261896273.1 2276812..2278239(+) (sbcB) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MTKNSEQPSFFFFDYETWGTSPAKDRPSQFAGIRTDADFNIIGDPLVMYCRLPADYLPGAEAALITGITPQKAMSQGVSE
PEFIGRIYEELARPNTTSLGYNSIRFDDEVTRYTCYRNFFDPYEWSWKNGNSRWDLLDVLRACHALRPEGIVWPENDEGF
PSFKLEHLSKANGIEHDNAHDALADVIATIEMAKRVKAAQPKLFDYFYSMRNKRKLTELVDIVNMTPLMHVSGMLGRECQ
YTSWIVPVAWHPTNQNAVITVDLAKDPTPLLELSAQELQTRLYTRREDLADDELPVPVKLVHLNKCPILAPAKTLTAENA
KVIGINREQCLANLATLREHPAIREKLITLFSQEREFAKDDDVDTQLYDGFFSPADKAAMEIIRESNPEQLGSLDLQFSD
KRIEPLLFRYRARHYPWTLSDTEQRRWANHCREYFENNIEAYMLNLENLVHEHESDAQKIAILKAVYRYVEQLAS

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=89249 OCV11_RS10360 WP_261896273.1 2276812..2278239(+) (sbcB) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATTACAAAAAATAGCGAACAACCGTCATTCTTCTTCTTTGACTATGAAACATGGGGCACCAGCCCAGCCAAAGACAGACC
AAGTCAGTTTGCTGGCATTCGTACCGATGCAGACTTCAATATTATTGGTGATCCACTGGTCATGTATTGTCGCCTTCCAG
CCGACTATCTCCCTGGCGCTGAAGCCGCGCTGATCACCGGAATCACCCCACAAAAAGCGATGAGCCAAGGCGTATCTGAG
CCTGAGTTTATCGGGCGTATTTATGAAGAGCTTGCTCGTCCTAATACCACCAGCCTAGGTTACAACAGCATTCGCTTTGA
TGATGAAGTCACTCGTTACACCTGTTACCGCAACTTCTTTGATCCTTACGAGTGGAGCTGGAAAAACGGCAACTCGCGTT
GGGATCTACTTGATGTGCTGCGTGCTTGTCATGCTCTGCGTCCGGAAGGCATTGTTTGGCCGGAAAATGACGAAGGCTTT
CCTAGCTTTAAACTGGAACACCTCTCTAAAGCCAATGGCATAGAGCACGATAATGCCCACGATGCGCTCGCCGATGTTAT
CGCTACTATTGAAATGGCAAAACGTGTCAAAGCGGCTCAACCTAAGTTGTTCGACTACTTTTACAGTATGCGTAACAAGC
GTAAATTGACGGAGCTGGTTGATATCGTCAATATGACACCACTAATGCACGTCTCTGGAATGCTGGGGCGCGAATGCCAA
TACACCAGTTGGATTGTGCCCGTGGCTTGGCATCCAACCAATCAAAACGCAGTGATTACGGTGGATTTGGCCAAAGATCC
GACGCCACTACTTGAGCTTTCTGCACAAGAGTTGCAGACCCGCCTGTATACGCGTAGAGAGGATCTAGCTGACGATGAGT
TGCCTGTACCCGTGAAATTAGTTCACCTTAATAAATGCCCCATTTTGGCCCCTGCCAAAACGCTGACGGCGGAAAACGCC
AAAGTCATCGGCATTAATCGTGAACAATGCTTGGCGAATTTGGCGACCTTGCGTGAGCATCCAGCCATTCGCGAAAAACT
CATTACTCTCTTTAGCCAAGAACGTGAATTTGCTAAAGATGACGATGTAGACACACAGTTGTATGACGGTTTCTTCTCCC
CAGCGGATAAAGCAGCAATGGAGATCATCCGTGAAAGCAACCCAGAACAATTGGGTTCGTTAGATTTGCAGTTCAGTGAT
AAACGCATTGAACCTTTGCTGTTCCGTTATCGTGCGCGTCATTATCCATGGACATTAAGCGATACAGAGCAACGTCGTTG
GGCTAATCACTGCCGAGAGTATTTTGAAAACAATATTGAGGCTTATATGCTCAATTTGGAAAATTTGGTTCACGAACATG
AAAGCGATGCTCAGAAAATCGCGATATTAAAAGCCGTATATCGGTATGTAGAACAACTCGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(12-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(211-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.661

99.368

0.792

Multiple sequence alignment