Detailed information NTG0088522

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCUAc17_RS17365
• Genome accession: NZ_AP024798
• Coordinates: 3652100..3652960 (+)
• Length: 286 a.a.
• NCBI ID: WP_002114758.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain OCU Ac17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3647100..3657960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCUAc17_RS17345 (OCUAc17_33870)	secG	3647707..3648036 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
OCUAc17_RS17350 (OCUAc17_33880)	tpiA	3648049..3648843 (-)	795	WP_002114826.1	triose-phosphate isomerase	-
OCUAc17_RS17355 (OCUAc17_33890)	pilB	3649135..3650847 (+)	1713	WP_005804145.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OCUAc17_RS17360 (OCUAc17_33900)	pilC	3650874..3652100 (+)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
OCUAc17_RS17365 (OCUAc17_33910)	pilD	3652100..3652960 (+)	861	WP_002114758.1	A24 family peptidase	Machinery gene
OCUAc17_RS17370 (OCUAc17_33920)	coaE	3652962..3653558 (+)	597	WP_002115011.1	dephospho-CoA kinase	-
OCUAc17_RS17375 (OCUAc17_33930)	-	3653555..3654469 (-)	915	WP_005804143.1	DMT family transporter	-
OCUAc17_RS17380 (OCUAc17_33940)	rlmB	3654505..3655254 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
OCUAc17_RS17385 (OCUAc17_33950)	-	3655357..3655683 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
OCUAc17_RS17390 (OCUAc17_33960)	-	3655760..3657070 (-)	1311	WP_002114682.1	hypothetical protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32168.70 Da
• Isoelectric Point: 7.1044

>NTDB_id=88522 OCUAc17_RS17365 WP_002114758.1 3652100..3652960(+) (pilD) [Acinetobacter pittii strain OCU Ac17]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=88522 OCUAc17_RS17365 WP_002114758.1 3652100..3652960(+) (pilD) [Acinetobacter pittii strain OCU Ac17]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437