Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   RMP64_RS00805 Genome accession   NZ_CP135093
Coordinates   128669..128962 (+) Length   97 a.a.
NCBI ID   WP_024394703.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123669..133962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS00775 (RMP64_00775) - 124694..125059 (+) 366 WP_002936568.1 DUF1033 family protein -
  RMP64_RS00780 (RMP64_00780) - 125094..126044 (-) 951 WP_024394700.1 S66 peptidase family protein -
  RMP64_RS00785 (RMP64_00785) comYA 126130..127080 (+) 951 WP_014637312.1 competence type IV pilus ATPase ComGA Machinery gene
  RMP64_RS00790 (RMP64_00790) comYB 126992..128029 (+) 1038 WP_043032925.1 competence type IV pilus assembly protein ComGB Machinery gene
  RMP64_RS00795 (RMP64_00795) comYC 128031..128312 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  RMP64_RS00800 (RMP64_00800) comGD 128293..128697 (+) 405 WP_087013850.1 competence type IV pilus minor pilin ComGD -
  RMP64_RS00805 (RMP64_00805) comYE 128669..128962 (+) 294 WP_024394703.1 competence type IV pilus minor pilin ComGE Machinery gene
  RMP64_RS00810 (RMP64_00810) comGF/cglF 128949..129383 (+) 435 WP_029750050.1 competence type IV pilus minor pilin ComGF Machinery gene
  RMP64_RS00815 (RMP64_00815) comGG 129361..129771 (+) 411 WP_024394705.1 competence type IV pilus minor pilin ComGG -
  RMP64_RS00820 (RMP64_00820) comYH 129828..130781 (+) 954 WP_024394706.1 class I SAM-dependent methyltransferase Machinery gene
  RMP64_RS00825 (RMP64_00825) - 130831..132018 (+) 1188 WP_014637319.1 acetate kinase -
  RMP64_RS00830 (RMP64_00830) - 132333..132884 (+) 552 WP_014636756.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10771.63 Da        Isoelectric Point: 9.8348

>NTDB_id=885019 RMP64_RS00805 WP_024394703.1 128669..128962(+) (comYE) [Streptococcus suis strain 1652329]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTEQDNLALNGVTVQVKRTAD
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=885019 RMP64_RS00805 WP_024394703.1 128669..128962(+) (comYE) [Streptococcus suis strain 1652329]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTTTGGTTGCCCTTGCGACCCTGGTAACCAT
TTGCAGCTTGATTTTGTCAGCGGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCTCAGATGGCTGTCCAGACCGAGCAAGATAACTTAGCCTTAAACGGTGTTACAGTTCAGGTGAAACGAACGGCGGAC
AGGGTTGCGGTTTTCCATGAGGGGAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371