Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCUAc17_RS01000 Genome accession   NZ_AP024798
Coordinates   222294..222881 (+) Length   195 a.a.
NCBI ID   WP_005804461.1    Uniprot ID   A0A009RDI8
Organism   Acinetobacter pittii strain OCU Ac17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 217294..227881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc17_RS00975 (OCUAc17_01900) - 217914..218267 (+) 354 WP_005066877.1 DUF1304 domain-containing protein -
  OCUAc17_RS00980 (OCUAc17_01910) glpM 218320..218661 (+) 342 WP_005804458.1 GlpM family protein -
  OCUAc17_RS00985 (OCUAc17_01920) tenA 218712..219386 (-) 675 WP_005804459.1 thiaminase II -
  OCUAc17_RS00990 (OCUAc17_01930) - 219649..220731 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  OCUAc17_RS00995 (OCUAc17_01940) yajR 220878..222242 (+) 1365 WP_005078603.1 MFS transporter -
  OCUAc17_RS01000 (OCUAc17_01950) ssb 222294..222881 (+) 588 WP_005804461.1 single-stranded DNA-binding protein Machinery gene
  OCUAc17_RS01005 (OCUAc17_01960) - 222922..223245 (-) 324 WP_005804463.1 AzlD domain-containing protein -
  OCUAc17_RS01010 (OCUAc17_01970) - 223242..223937 (-) 696 WP_005804464.1 AzlC family ABC transporter permease -
  OCUAc17_RS01015 (OCUAc17_01980) ydcN 224006..224554 (+) 549 WP_002117406.1 XRE family transcriptional regulator -
  OCUAc17_RS01020 (OCUAc17_01990) - 224860..226302 (+) 1443 WP_005804465.1 amino acid permease -
  OCUAc17_RS01025 (OCUAc17_02000) - 226369..227868 (-) 1500 WP_005804466.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21195.98 Da        Isoelectric Point: 6.4822

>NTDB_id=88485 OCUAc17_RS01000 WP_005804461.1 222294..222881(+) (ssb) [Acinetobacter pittii strain OCU Ac17]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=88485 OCUAc17_RS01000 WP_005804461.1 222294..222881(+) (ssb) [Acinetobacter pittii strain OCU Ac17]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RDI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39

Multiple sequence alignment