Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M9H31_RS12215 Genome accession   NZ_CP134839
Coordinates   2529418..2529927 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain ADQBK     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2524418..2534927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H31_RS12175 (M9H31_12175) - 2524662..2524919 (+) 258 WP_002458613.1 hypothetical protein -
  M9H31_RS12180 (M9H31_12180) - 2525175..2525618 (-) 444 WP_032604565.1 hypothetical protein -
  M9H31_RS12185 (M9H31_12185) - 2525615..2526175 (-) 561 WP_002458614.1 ImmA/IrrE family metallo-endopeptidase -
  M9H31_RS12190 (M9H31_12190) - 2526588..2526851 (-) 264 WP_002496402.1 hypothetical protein -
  M9H31_RS12195 (M9H31_12195) - 2528076..2528264 (-) 189 WP_002458616.1 hypothetical protein -
  M9H31_RS12200 (M9H31_12200) - 2528397..2528663 (-) 267 Protein_2357 terminase small subunit -
  M9H31_RS12205 (M9H31_12205) - 2528671..2528906 (+) 236 Protein_2358 Abi family protein -
  M9H31_RS12210 (M9H31_12210) rpsR 2529131..2529373 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  M9H31_RS12215 (M9H31_12215) ssbA 2529418..2529927 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  M9H31_RS12220 (M9H31_12220) rpsF 2529950..2530246 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  M9H31_RS12225 (M9H31_12225) - 2530631..2531440 (+) 810 WP_099816513.1 GH25 family lysozyme -
  M9H31_RS12230 (M9H31_12230) - 2531515..2531706 (+) 192 WP_001831355.1 hypothetical protein -
  M9H31_RS12235 (M9H31_12235) ychF 2531939..2533036 (-) 1098 WP_002447679.1 redox-regulated ATPase YchF -
  M9H31_RS12240 (M9H31_12240) - 2533036..2533251 (-) 216 WP_002447678.1 DUF951 domain-containing protein -
  M9H31_RS12245 (M9H31_12245) - 2533272..2534147 (-) 876 WP_002458618.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=884053 M9H31_RS12215 WP_002447681.1 2529418..2529927(-) (ssbA) [Staphylococcus epidermidis strain ADQBK]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=884053 M9H31_RS12215 WP_002447681.1 2529418..2529927(-) (ssbA) [Staphylococcus epidermidis strain ADQBK]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379