Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CDIFJ21_RS11450 Genome accession   NZ_CP134690
Coordinates   2439514..2441346 (-) Length   610 a.a.
NCBI ID   WP_003433862.1    Uniprot ID   A0A031WIR2
Organism   Clostridioides difficile strain J2_1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2434514..2446346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIFJ21_RS11430 (CDIFJ21_22720) - 2434539..2435903 (-) 1365 WP_021362689.1 aldehyde dehydrogenase -
  CDIFJ21_RS19025 (CDIFJ21_22730) - 2436215..2436382 (-) 168 WP_021362690.1 hypothetical protein -
  CDIFJ21_RS19030 (CDIFJ21_22740) - 2436511..2436738 (-) 228 WP_021362691.1 flavodoxin domain protein -
  CDIFJ21_RS11440 (CDIFJ21_22750) - 2436788..2437285 (-) 498 WP_009890383.1 MarR family winged helix-turn-helix transcriptional regulator -
  CDIFJ21_RS11445 (CDIFJ21_22760) hflX 2437518..2438789 (-) 1272 WP_009897369.1 GTPase HflX -
  CDIFJ21_RS11450 (CDIFJ21_22770) rcrQ 2439514..2441346 (-) 1833 WP_003433862.1 ABC transporter ATP-binding protein Regulator
  CDIFJ21_RS11455 (CDIFJ21_22780) - 2441339..2443585 (-) 2247 WP_003433859.1 ABC transporter ATP-binding protein -
  CDIFJ21_RS11460 (CDIFJ21_22790) - 2443653..2444114 (-) 462 WP_003433857.1 MarR family winged helix-turn-helix transcriptional regulator -
  CDIFJ21_RS11465 (CDIFJ21_22810) - 2444419..2444985 (-) 567 WP_003423380.1 beta-class carbonic anhydrase -
  CDIFJ21_RS11470 (CDIFJ21_22820) - 2445670..2446008 (+) 339 WP_003423377.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68031.88 Da        Isoelectric Point: 6.2927

>NTDB_id=882844 CDIFJ21_RS11450 WP_003433862.1 2439514..2441346(-) (rcrQ) [Clostridioides difficile strain J2_1]
MSRMGRGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFNAIGKILTFLLFLYLISALFSFIQGFIMSGISQKVSYNLRKEISAKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAVLILPISMFVISRIIKKSQKYFRYQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEVQIVENAVSIDGLEGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYKMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=882844 CDIFJ21_RS11450 WP_003433862.1 2439514..2441346(-) (rcrQ) [Clostridioides difficile strain J2_1]
ATGAGTAGAATGGGAAGAGGTCCTATGGGAAAATCTATGGGAGCAGGACAAAAAGCAAATGACTTTAAAGGGACTATGCG
AAAACTAATTGCATATTTATCTAAATTTAAAATATCAATAATTCTAGTAATTGTATTTGCTATTGGTAGTGCGTCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGAAAGGCAACTACAAAGATATTTGAAGGGCTAGTGAGTAAAGTTTCTGGAGGAAAC
GTAGGTATAGATTTTAATGCAATTGGAAAAATCTTAACCTTTTTACTTTTCCTTTATTTGATAAGTGCACTGTTCTCTTT
TATACAAGGATTTATAATGAGTGGAATTTCTCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCAGCAAAATTGGATA
GATTGCCAATGAAGTATTTTGATACTAAGACGCATGGTGAAATATTATCGAGAATTACGAATGATATAGATACTTTAAAT
CAAAGTTTAAATCAAAGTATGACACAGCTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGAATTATGACATTAGTGGCAGTTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAATAAAGAAATCAC
AAAAATACTTTAGATATCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAGGAAACTTACAGTGGCCAAACAATA
GTAAAAGCATTTAATCGTGAGGATGAAGTAATTGAAGAGTTTGATAAACTAAATGATAGCCTGTATAATTCAGCGTGGAA
ATCTCAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTATTGGAAACTTGGGATATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGTGACATACAGTCATTTATACAATATGTAAGAAACTTTACACAG
CCAATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGTCCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGTAAAATTGATTTTGAAAATGTCA
ACTTTGGATATAACCCAAACAAGACTATAATAAATGATTTCTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACAATAGTTAAACTGTTAATGAGATTTTATGATGTTAATAGCGGTTCAATACTGAT
TGATGGTCATAATATTAAAGATTTTAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTTATAGAGGCTGCTAAATCT
GCACATGTTCATAGATTTATTAAGACATTACCAGATGGATATAAGATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCTGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTT
CTGTCGATACTAGAACAGAAGTATTGATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGAGATATAGTTGAACAAGGAAATCACGA
GGAACTTCTAAAGAAAGGCGGATTCTATGCCAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-322)

ABC transporter (ABC_tran)

(385-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031WIR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.607

96.885

0.5