Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RKQ55_RS14945 Genome accession   NZ_CP134586
Coordinates   3133201..3133611 (-) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain XH1026     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3128201..3138611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS14915 (RKQ55_14950) - 3128287..3128556 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RKQ55_RS14920 (RKQ55_14955) rapZ 3128553..3129404 (-) 852 WP_000821671.1 RNase adapter RapZ -
  RKQ55_RS14925 (RKQ55_14960) panC 3129427..3130275 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  RKQ55_RS14930 (RKQ55_14965) panB 3130279..3131088 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RKQ55_RS14935 (RKQ55_14970) folK 3131134..3131616 (-) 483 WP_000219222.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RKQ55_RS14940 (RKQ55_14975) pcnB 3131613..3133076 (-) 1464 WP_005129648.1 polynucleotide adenylyltransferase PcnB -
  RKQ55_RS14945 (RKQ55_14980) comEA 3133201..3133611 (-) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  RKQ55_RS14950 (RKQ55_14985) mazG 3133580..3134386 (-) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  RKQ55_RS14955 (RKQ55_14990) - 3134498..3135271 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  RKQ55_RS14960 (RKQ55_14995) - 3135316..3137622 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=881891 RKQ55_RS14945 WP_002041921.1 3133201..3133611(-) (comEA) [Acinetobacter baumannii strain XH1026]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=881891 RKQ55_RS14945 WP_002041921.1 3133201..3133611(-) (comEA) [Acinetobacter baumannii strain XH1026]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGACCAGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382