Detailed information NTG0881189

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: RKQ70_RS10130
• Genome accession: NZ_CP134552
• Coordinates: 2130856..2131557 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain XH1047
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2125856..2136557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ70_RS10100 (RKQ70_10120)	-	2126163..2126606 (-)	444	WP_001246675.1	SRPBCC family protein	-
RKQ70_RS10105 (RKQ70_10125)	tadA	2126676..2127179 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
RKQ70_RS10110 (RKQ70_10130)	-	2127186..2128310 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
RKQ70_RS10115 (RKQ70_10135)	ung	2128307..2129020 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
RKQ70_RS10120 (RKQ70_10140)	-	2129071..2129667 (-)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
RKQ70_RS10125 (RKQ70_10145)	gspK	2129897..2130856 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
RKQ70_RS10130 (RKQ70_10150)	xcpW	2130856..2131557 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RKQ70_RS10135 (RKQ70_10155)	xcpV	2131557..2131937 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
RKQ70_RS10140 (RKQ70_10160)	-	2131927..2132481 (-)	555	WP_000841373.1	type II secretion system protein	-
RKQ70_RS10145 (RKQ70_10165)	-	2132491..2133099 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RKQ70_RS10150 (RKQ70_10170)	-	2133137..2133910 (-)	774	WP_000497300.1	TatD family hydrolase	-
RKQ70_RS10155 (RKQ70_10175)	-	2133928..2134269 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
RKQ70_RS10160 (RKQ70_10180)	-	2134281..2135261 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
RKQ70_RS10165 (RKQ70_10185)	kdsB	2135273..2136034 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=881189 RKQ70_RS10130 WP_000594579.1 2130856..2131557(-) (xcpW) [Acinetobacter baumannii strain XH1047]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=881189 RKQ70_RS10130 WP_000594579.1 2130856..2131557(-) (xcpW) [Acinetobacter baumannii strain XH1047]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983