Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RI106_RS08175 Genome accession   NZ_CP134071
Coordinates   1646518..1647021 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain 4233     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1641518..1652021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI106_RS08140 (RI106_08140) - 1641572..1641835 (+) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  RI106_RS08145 (RI106_08145) - 1641973..1642545 (-) 573 WP_000769720.1 PepSY domain-containing protein -
  RI106_RS08150 (RI106_08150) - 1642723..1643095 (-) 373 Protein_1565 YxeA family protein -
  RI106_RS08155 (RI106_08155) - 1643464..1644075 (-) 612 WP_045173117.1 exotoxin beta-grasp domain-containing protein -
  RI106_RS08160 (RI106_08160) - 1644281..1644980 (+) 700 Protein_1567 tyrosine-type recombinase/integrase -
  RI106_RS08165 (RI106_08165) - 1645019..1645957 (+) 939 WP_001817700.1 Abi family protein -
  RI106_RS08170 (RI106_08170) rpsR 1646223..1646465 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  RI106_RS08175 (RI106_08175) ssbA 1646518..1647021 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  RI106_RS08180 (RI106_08180) rpsF 1647042..1647338 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  RI106_RS08185 (RI106_08185) - 1647582..1647773 (+) 192 WP_001052483.1 hypothetical protein -
  RI106_RS08190 (RI106_08190) ychF 1647859..1648956 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  RI106_RS08195 (RI106_08195) - 1648968..1649171 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  RI106_RS08200 (RI106_08200) - 1649201..1650082 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  RI106_RS08205 (RI106_08205) - 1650239..1651084 (-) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=878693 RI106_RS08175 WP_000934799.1 1646518..1647021(-) (ssbA) [Staphylococcus aureus strain 4233]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=878693 RI106_RS08175 WP_000934799.1 1646518..1647021(-) (ssbA) [Staphylococcus aureus strain 4233]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365