Detailed information    

insolico Bioinformatically predicted

Overview


Name   comK/comK1   Type   Regulator
Locus tag   OCX16_RS04700 Genome accession   NZ_AP024730
Coordinates   982788..983357 (-) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   A0A7U7EXU5
Organism   Staphylococcus aureus strain 59574     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 977788..988357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX16_RS04680 - 979293..980651 (+) 1359 WP_000021864.1 TrkH family potassium uptake protein -
  OCX16_RS04685 - 980790..982301 (+) 1512 WP_000414174.1 bifunctional metallophosphatase/5'-nucleotidase -
  OCX16_RS04700 comK/comK1 982788..983357 (-) 570 WP_000287265.1 competence protein ComK Regulator
  OCX16_RS04705 - 983567..983785 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  OCX16_RS04710 - 983866..984852 (-) 987 WP_000668820.1 lipoate--protein ligase -
  OCX16_RS04715 - 985051..985227 (+) 177 WP_000214898.1 YkvS family protein -
  OCX16_RS04720 - 985242..985844 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  OCX16_RS04725 - 986100..986162 (+) 63 WP_228764722.1 hypothetical protein -
  OCX16_RS04730 - 986701..986802 (+) 102 WP_031893173.1 hypothetical protein -
  OCX16_RS04735 - 986812..987084 (+) 273 WP_001797239.1 lactococcin 972 family bacteriocin -

Sequence


Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=87855 OCX16_RS04700 WP_000287265.1 982788..983357(-) (comK/comK1) [Staphylococcus aureus strain 59574]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=87855 OCX16_RS04700 WP_000287265.1 982788..983357(-) (comK/comK1) [Staphylococcus aureus strain 59574]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains


Predicted by InterproScan.

(5-156)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7U7EXU5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1

  comK/comK1 Staphylococcus aureus N315

100

100

1


Multiple sequence alignment