Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RE424_RS08300 Genome accession   NZ_CP134047
Coordinates   1679637..1680083 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 21SAU_AGRO3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1674637..1685083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE424_RS08270 gcvPA 1675563..1676909 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RE424_RS08275 gcvT 1676929..1678020 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  RE424_RS08280 - 1678179..1678703 (-) 525 WP_001015121.1 shikimate kinase -
  RE424_RS08285 - 1678693..1678839 (-) 147 WP_001789879.1 hypothetical protein -
  RE424_RS08290 comGF 1678936..1679433 (-) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  RE424_RS08295 comGE 1679351..1679650 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  RE424_RS08300 comGD 1679637..1680083 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  RE424_RS08305 comGC 1680061..1680372 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RE424_RS08310 comGB 1680386..1681456 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  RE424_RS08315 comGA 1681428..1682402 (-) 975 WP_000697217.1 competence type IV pilus ATPase ComGA Machinery gene
  RE424_RS08320 - 1682454..1683077 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RE424_RS08325 - 1683074..1683403 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RE424_RS08330 - 1683403..1684389 (-) 987 WP_000161314.1 ROK family glucokinase -
  RE424_RS08335 - 1684386..1684589 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=878329 RE424_RS08300 WP_001788899.1 1679637..1680083(-) (comGD) [Staphylococcus aureus strain 21SAU_AGRO3]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=878329 RE424_RS08300 WP_001788899.1 1679637..1680083(-) (comGD) [Staphylococcus aureus strain 21SAU_AGRO3]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1