Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   RIM75_RS10250 Genome accession   NZ_CP133957
Coordinates   49069..49167 (+) Length   32 a.a.
NCBI ID   WP_021320241.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain HT1112     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 44069..54167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM75_RS00265 (RIM75_00265) purE 44099..44587 (+) 489 WP_012678776.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RIM75_RS00270 (RIM75_00270) purK 44574..45647 (+) 1074 WP_012678777.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RIM75_RS00275 (RIM75_00275) - 45662..45886 (+) 225 WP_012678778.1 hypothetical protein -
  RIM75_RS00280 (RIM75_00280) purB 46483..47775 (+) 1293 WP_042357336.1 adenylosuccinate lyase -
  RIM75_RS00285 (RIM75_00285) - 48073..48986 (+) 914 Protein_35 helix-turn-helix domain-containing protein -
  RIM75_RS10250 comS 49069..49167 (+) 99 WP_021320241.1 quorum-sensing system DWW-type pheromone Regulator
  RIM75_RS00290 (RIM75_00290) ruvB 49201..50208 (+) 1008 WP_012678780.1 Holliday junction branch migration DNA helicase RuvB -
  RIM75_RS00295 (RIM75_00295) - 50449..50907 (+) 459 WP_012678781.1 low molecular weight protein-tyrosine-phosphatase -
  RIM75_RS00300 (RIM75_00300) - 50913..51314 (+) 402 WP_012514718.1 MORN repeat-containing protein -
  RIM75_RS00305 (RIM75_00305) - 51311..53092 (+) 1782 WP_012678782.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3937.66 Da        Isoelectric Point: 8.5430

>NTDB_id=877998 RIM75_RS10250 WP_021320241.1 49069..49167(+) (comS) [Streptococcus equi subsp. equi strain HT1112]
MFKKYQYYLFLAALFLLHSAQLLSDIDWWRVG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=877998 RIM75_RS10250 WP_021320241.1 49069..49167(+) (comS) [Streptococcus equi subsp. equi strain HT1112]
ATGTTTAAAAAATACCAATACTATCTGTTTTTAGCTGCTTTATTTCTACTTCATTCTGCCCAATTACTTAGTGATATTGA
CTGGTGGCGTGTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

51.613

96.875

0.5
  comS Streptococcus pyogenes MGAS315

37.5

100

0.375