Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RBU61_RS18285 Genome accession   NZ_CP133261
Coordinates   3650629..3652476 (+) Length   615 a.a.
NCBI ID   WP_308877108.1    Uniprot ID   A0AA51MU59
Organism   Tissierella sp. MB52-C2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645629..3657476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU61_RS18270 (RBU61_18270) - 3645913..3647739 (+) 1827 WP_308877105.1 ABC transporter ATP-binding protein -
  RBU61_RS18275 (RBU61_18275) - 3647925..3648368 (+) 444 WP_308877106.1 MarR family transcriptional regulator -
  RBU61_RS18280 (RBU61_18280) - 3648386..3650632 (+) 2247 WP_308877107.1 ABC transporter ATP-binding protein -
  RBU61_RS18285 (RBU61_18285) rcrQ 3650629..3652476 (+) 1848 WP_308877108.1 ABC transporter ATP-binding protein Regulator
  RBU61_RS18290 (RBU61_18290) - 3652535..3653740 (-) 1206 WP_308877109.1 aspartate kinase -
  RBU61_RS18295 (RBU61_18295) - 3654234..3654437 (+) 204 WP_308877110.1 ABC transporter transmembrane domain-containing protein -
  RBU61_RS18300 (RBU61_18300) - 3655000..3655200 (-) 201 WP_308877111.1 helix-turn-helix transcriptional regulator -
  RBU61_RS18305 (RBU61_18305) - 3655256..3655846 (-) 591 WP_308877112.1 hypothetical protein -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 68370.18 Da        Isoelectric Point: 6.5244

>NTDB_id=872824 RBU61_RS18285 WP_308877108.1 3650629..3652476(+) (rcrQ) [Tissierella sp. MB52-C2]
MSEKNIKRNTPRGGHMGGGPVGARFEKPEDFKGTFSKLLAYLKPYTFKLIVVMIFAIGSTVFSIVGPKILGKATTKIFEG
LVAKVSGAGEGIDFQYILNIVLLLIGLYVISALFSYIQGFIVTGVAQKVSYNLRKEISEKINKLPLKYFDNISHGDVLSR
VTNDVDTVSQTLNQSMSQIITSATTLVGVLIMMLSISWQMTILAILILPLSMGLVMAIVKRSQKYFKAQQESLGKVNGHI
EEIYGGHNIMKAFNAEEEAVEEFTKINGELYSSAWKSQFLSGMMMPIMNFIGNLGYVAVSILGGWFAVRKTIEVGDILSF
IQYIRNFTQPIAQVAQISNVLQSTVAAAERVFVFLDEEEEVKESTTPVKLEEVEGRVTFENVKFGYSEDKIIINNFSQNI
KPGQKVAIVGPTGAGKTTIVKLLMRFYDLNEGRILIDGNDINDFTRENLRNNFGMVLQDTWLFSGTIMENIKYGRLDATD
AEVIEASKSAHAHRFIQTLPDGYNMVINEEANNISQGQKQLLTIARAILSDPKILILDEATSSVDTRTEVLIQKAMENLM
KGRTSFIIAHRLSTIRDADLILVMKDGDIIEQGSHEELLKKNGFYAELYNSQFAA

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=872824 RBU61_RS18285 WP_308877108.1 3650629..3652476(+) (rcrQ) [Tissierella sp. MB52-C2]
ATGAGTGAAAAAAATATAAAAAGAAATACTCCCAGAGGCGGACATATGGGTGGTGGGCCTGTGGGGGCTAGGTTTGAGAA
ACCTGAGGATTTTAAGGGGACATTTTCAAAGTTATTAGCTTATCTAAAACCATATACATTTAAATTAATTGTAGTAATGA
TATTTGCCATAGGTAGTACAGTATTTTCCATAGTAGGACCCAAAATTCTTGGTAAGGCTACAACTAAGATATTTGAAGGA
TTAGTAGCTAAAGTATCTGGGGCAGGTGAAGGAATAGATTTCCAATATATATTAAATATAGTATTGCTTTTAATAGGACT
ATATGTAATATCTGCCTTATTTTCCTATATACAAGGGTTTATAGTAACTGGAGTGGCACAAAAGGTAAGCTATAATTTAA
GAAAAGAAATATCTGAAAAAATAAATAAACTTCCACTTAAATATTTTGATAATATAAGTCATGGAGATGTTTTATCTAGA
GTTACAAATGATGTAGATACTGTGAGTCAGACATTGAACCAGAGTATGAGTCAAATAATAACTTCCGCCACTACTCTAGT
AGGAGTTCTTATTATGATGTTATCTATATCTTGGCAGATGACTATTCTAGCCATTTTAATATTACCTTTATCCATGGGGT
TAGTTATGGCAATAGTTAAAAGGTCACAGAAATATTTCAAGGCACAACAGGAAAGCTTAGGAAAGGTAAACGGACATATA
GAAGAAATCTATGGTGGTCATAATATAATGAAGGCTTTTAATGCAGAAGAAGAGGCAGTTGAAGAATTTACAAAGATTAA
TGGAGAACTTTATAGTTCTGCATGGAAGTCACAATTCCTTTCTGGAATGATGATGCCTATTATGAACTTCATTGGTAATC
TAGGTTATGTAGCAGTATCAATTTTAGGTGGATGGTTTGCAGTTAGAAAAACCATAGAAGTAGGAGATATACTTTCTTTT
ATTCAATATATAAGAAACTTTACTCAGCCTATAGCTCAAGTAGCACAAATATCTAATGTATTACAATCTACAGTGGCTGC
TGCTGAAAGGGTATTTGTATTTTTAGATGAAGAAGAGGAAGTAAAGGAATCAACTACGCCTGTTAAATTAGAGGAAGTAG
AAGGAAGAGTTACCTTTGAAAATGTTAAATTTGGATATAGTGAAGATAAAATAATAATAAATAATTTTTCACAAAACATA
AAACCAGGGCAAAAAGTTGCCATAGTAGGGCCTACTGGTGCAGGAAAAACTACCATAGTAAAATTACTAATGAGATTCTA
TGATCTAAATGAAGGTAGAATTTTAATAGATGGTAACGATATAAATGATTTTACAAGGGAAAATTTAAGAAATAACTTTG
GAATGGTTCTTCAAGATACATGGCTATTTAGTGGAACAATAATGGAAAATATAAAATATGGCAGATTAGATGCAACAGAT
GCAGAAGTAATAGAAGCTTCTAAATCTGCCCATGCTCATAGATTTATTCAAACATTACCAGATGGATATAATATGGTCAT
AAATGAAGAAGCAAATAATATATCTCAAGGACAAAAACAACTTTTAACCATAGCAAGGGCAATACTCTCCGATCCTAAAA
TACTTATCTTAGATGAGGCAACATCTTCTGTAGATACAAGGACGGAGGTATTAATTCAAAAAGCAATGGAAAACCTTATG
AAGGGAAGAACATCCTTTATAATTGCCCATAGACTTTCAACCATAAGAGATGCAGATTTAATTCTAGTAATGAAAGATGG
AGATATAATAGAGCAAGGAAGCCATGAAGAGCTTCTAAAGAAAAATGGATTTTATGCAGAATTATATAATAGTCAATTTG
CAGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(49-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.577

94.634

0.498