Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BsBEST3145_RS11940 Genome accession   NZ_AP024625
Coordinates   2306895..2307515 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3109     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2301895..2312515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BsBEST3145_RS11900 (BsBEST3109_22730) ptsA 2303026..2303532 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  BsBEST3145_RS11905 (BsBEST3109_22740) ypqA 2303670..2304089 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  BsBEST3145_RS11910 (BsBEST3109_22750) sppG 2304110..2304487 (-) 378 WP_004398696.1 YppG family protein -
  BsBEST3145_RS11915 (BsBEST3109_22760) yppF 2304675..2304863 (+) 189 WP_003230690.1 YppF family protein -
  BsBEST3145_RS11920 (BsBEST3109_22770) yppE 2304902..2305273 (-) 372 WP_003246080.1 YppE family protein -
  BsBEST3145_RS11925 (BsBEST3109_22780) yppD 2305319..2305564 (-) 246 WP_004398488.1 YppD family protein -
  BsBEST3145_RS11930 sspM 2305763..2305867 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  BsBEST3145_RS11935 (BsBEST3109_22790) yppC 2305892..2306854 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  BsBEST3145_RS11940 (BsBEST3109_22800) recU 2306895..2307515 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  BsBEST3145_RS11945 (BsBEST3109_22810) ponA 2307537..2310281 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  BsBEST3145_RS11950 (BsBEST3109_22820) ypoC 2310357..2310851 (-) 495 WP_009967579.1 YpoC family protein -
  BsBEST3145_RS11955 (BsBEST3109_22830) nth 2310848..2311507 (-) 660 WP_009967580.1 endonuclease III -
  BsBEST3145_RS11960 (BsBEST3109_22840) dnaD 2311526..2312224 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=87117 BsBEST3145_RS11940 WP_004399067.1 2306895..2307515(+) (recU) [Bacillus subtilis strain BEST3109]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=87117 BsBEST3145_RS11940 WP_004399067.1 2306895..2307515(+) (recU) [Bacillus subtilis strain BEST3109]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment