Detailed information NTG0086770

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: K6J89_RS08685
• Genome accession: NZ_AP024621
• Coordinates: 1669303..1670082 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain BEST3095
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1664303..1675082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J89_RS08665 (BsBEST3095_16350)	trmFO	1664996..1666303 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
K6J89_RS08670 (BsBEST3095_16360)	xerC	1666371..1667285 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
K6J89_RS08675 (BsBEST3095_16370)	clpQ	1667298..1667843 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
K6J89_RS08680 (BsBEST3095_16380)	hslU	1667860..1669263 (+)	1404	WP_003245556.1	HslU--HslV peptidase ATPase subunit	-
K6J89_RS08685 (BsBEST3095_16390)	codY	1669303..1670082 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
K6J89_RS08690 (BsBEST3095_16400)	flgB	1670462..1670851 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
K6J89_RS08695 (BsBEST3095_16410)	flgC	1670851..1671303 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
K6J89_RS08700 (BsBEST3095_16420)	fliE	1671314..1671634 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
K6J89_RS08705 (BsBEST3095_16430)	fliF	1671680..1673290 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
K6J89_RS08710 (BsBEST3095_16440)	fliG	1673303..1674319 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
K6J89_RS08715 (BsBEST3095_16450)	fliH	1674312..1675064 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=86770 K6J89_RS08685 WP_003220850.1 1669303..1670082(+) (codY) [Bacillus subtilis strain BEST3095]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=86770 K6J89_RS08685 WP_003220850.1 1669303..1670082(+) (codY) [Bacillus subtilis strain BEST3095]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467