Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QFX47_RS07305 Genome accession   NZ_CP132033
Coordinates   1539432..1539878 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534432..1544878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX47_RS07275 gcvPA 1535358..1536704 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QFX47_RS07280 gcvT 1536724..1537815 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX47_RS07285 - 1537974..1538498 (-) 525 WP_001015119.1 shikimate kinase -
  QFX47_RS07290 - 1538488..1538634 (-) 147 WP_001789879.1 hypothetical protein -
  QFX47_RS07295 comGF 1538731..1539228 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX47_RS07300 comGE 1539146..1539445 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QFX47_RS07305 comGD 1539432..1539878 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX47_RS07310 comGC 1539856..1540167 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX47_RS07315 comGB 1540181..1541251 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX47_RS07320 comGA 1541223..1542197 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX47_RS07325 - 1542249..1542872 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX47_RS07330 - 1542869..1543198 (-) 330 WP_304984508.1 MTH1187 family thiamine-binding protein -
  QFX47_RS07335 - 1543198..1544184 (-) 987 WP_000161314.1 ROK family glucokinase -
  QFX47_RS07340 - 1544181..1544384 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=866843 QFX47_RS07305 WP_001788899.1 1539432..1539878(-) (comGD) [Staphylococcus aureus strain 2.1]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=866843 QFX47_RS07305 WP_001788899.1 1539432..1539878(-) (comGD) [Staphylococcus aureus strain 2.1]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1