Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   Q6388_RS08075 Genome accession   NZ_CP130895
Coordinates   1561234..1561878 (-) Length   214 a.a.
NCBI ID   WP_003689466.1    Uniprot ID   Q5F6K3
Organism   Neisseria gonorrhoeae strain NJ1913940     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1556234..1566878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6388_RS08040 (Q6388_08040) ftsL 1556715..1556978 (-) 264 WP_003701583.1 cell division protein FtsL -
  Q6388_RS08045 (Q6388_08045) rsmH 1557005..1557961 (-) 957 WP_003689462.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  Q6388_RS08050 (Q6388_08050) mraZ 1557958..1558413 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  Q6388_RS08055 (Q6388_08055) - 1558692..1559939 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  Q6388_RS08070 (Q6388_08070) - 1560380..1561201 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  Q6388_RS08075 (Q6388_08075) dsbA1 1561234..1561878 (-) 645 WP_003689466.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  Q6388_RS08080 (Q6388_08080) ftsN 1561881..1562744 (-) 864 WP_010360712.1 cell division protein FtsN -
  Q6388_RS08085 (Q6388_08085) comM 1562850..1564346 (-) 1497 WP_003689469.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q6388_RS08090 (Q6388_08090) - 1564360..1564680 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  Q6388_RS08095 (Q6388_08095) putP 1565168..1566694 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24003.07 Da        Isoelectric Point: 9.9225

>NTDB_id=861890 Q6388_RS08075 WP_003689466.1 1561234..1561878(-) (dsbA1) [Neisseria gonorrhoeae strain NJ1913940]
MKFKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQPGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDTYLRTEH
VVWRPEMLGLARMAAAVKLSGLKYQANSAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAVALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=861890 Q6388_RS08075 WP_003689466.1 1561234..1561878(-) (dsbA1) [Neisseria gonorrhoeae strain NJ1913940]
ATGAAGTTTAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGCCGGGAAAAATTGAGGTTTTGGAATTTTTCGGCTATTTTTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATACTTATCTGCGGACGGAGCAC
GTGGTCTGGCGGCCTGAAATGCTCGGTCTGGCAAGAATGGCTGCTGCGGTCAAGCTGTCGGGTTTGAAATATCAGGCAAA
CTCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGTTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTATCTC
AAAAAGGTTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGTCGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGATGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F6K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

52.688

86.916

0.458