Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V78_RS08425 Genome accession   NZ_CP130538
Coordinates   1702918..1703604 (-) Length   228 a.a.
NCBI ID   WP_226452139.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA11-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1697918..1708604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V78_RS08405 rpsT 1698834..1699085 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V78_RS08410 holA 1699128..1700102 (-) 975 WP_001282559.1 DNA polymerase III subunit delta -
  Q3V78_RS08415 comEC 1700159..1702360 (-) 2202 WP_042908045.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V78_RS08420 - 1702365..1702826 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V78_RS08425 comEA 1702918..1703604 (-) 687 WP_226452139.1 ComEA family DNA-binding protein Machinery gene
  Q3V78_RS08430 - 1703644..1704360 (-) 717 WP_000084828.1 class I SAM-dependent methyltransferase -
  Q3V78_RS08435 rsfS 1704363..1704716 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V78_RS08440 yqeK 1704717..1705301 (-) 585 WP_226452138.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V78_RS08445 nadD 1705291..1705860 (-) 570 WP_000725160.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V78_RS08450 yhbY 1705863..1706153 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  Q3V78_RS08455 aroE 1706157..1706963 (-) 807 WP_000666752.1 shikimate dehydrogenase -
  Q3V78_RS08460 yqeH 1706977..1708077 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=859883 Q3V78_RS08425 WP_226452139.1 1702918..1703604(-) (comEA) [Staphylococcus aureus strain SA11-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLSDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNINNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=859883 Q3V78_RS08425 WP_226452139.1 1702918..1703604(-) (comEA) [Staphylococcus aureus strain SA11-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGAAACATAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

98.238

99.561

0.978
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969