Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V56_RS02570 Genome accession   NZ_CP130518
Coordinates   551429..551998 (+) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain SA25-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 546429..556998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V56_RS02545 cysE 547642..548289 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V56_RS02550 cysS 548273..549673 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  Q3V56_RS02555 - 549666..550070 (+) 405 WP_000370186.1 Mini-ribonuclease 3 -
  Q3V56_RS02560 rlmB 550078..550824 (+) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V56_RS02565 - 550824..551348 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q3V56_RS02570 sigH 551429..551998 (+) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V56_RS02575 rpmG 552113..552256 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V56_RS02580 secE 552312..552494 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V56_RS02585 nusG 552507..553055 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V56_RS02590 rplK 553236..553658 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V56_RS02595 rplA 553866..554558 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V56_RS02600 rplJ 554830..555330 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V56_RS02605 rplL 555373..555741 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V56_RS02610 - 555916..556524 (+) 609 WP_000020296.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=859261 Q3V56_RS02570 WP_000872872.1 551429..551998(+) (sigH) [Staphylococcus aureus strain SA25-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=859261 Q3V56_RS02570 WP_000872872.1 551429..551998(+) (sigH) [Staphylococcus aureus strain SA25-SX]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979