Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   Q3O39_RS17490 Genome accession   NZ_CP130475
Coordinates   3534246..3535394 (-) Length   382 a.a.
NCBI ID   WP_007410270.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM126726     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3529246..3540394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O39_RS17460 (Q3O39_17460) - 3529382..3530140 (-) 759 WP_007609404.1 ABC transporter ATP-binding protein -
  Q3O39_RS17465 (Q3O39_17465) - 3530134..3531081 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  Q3O39_RS17470 (Q3O39_17470) ceuB 3531071..3532024 (-) 954 WP_032872883.1 ABC transporter permease Machinery gene
  Q3O39_RS17475 (Q3O39_17475) - 3532438..3533802 (+) 1365 WP_007609394.1 aspartate kinase -
  Q3O39_RS17480 (Q3O39_17480) - 3533897..3533992 (+) 96 WP_021495118.1 YjcZ family sporulation protein -
  Q3O39_RS17485 (Q3O39_17485) phrC 3534143..3534262 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  Q3O39_RS17490 (Q3O39_17490) rapC 3534246..3535394 (-) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  Q3O39_RS17495 (Q3O39_17495) - 3535547..3536980 (-) 1434 WP_161503657.1 HAMP domain-containing sensor histidine kinase -
  Q3O39_RS17500 (Q3O39_17500) - 3536967..3537650 (-) 684 WP_032872879.1 response regulator transcription factor -
  Q3O39_RS17505 (Q3O39_17505) - 3537863..3539293 (+) 1431 WP_032872876.1 ABC transporter permease -
  Q3O39_RS17510 (Q3O39_17510) - 3539308..3539991 (+) 684 WP_032872874.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45475.70 Da        Isoelectric Point: 4.9916

>NTDB_id=858491 Q3O39_RS17490 WP_007410270.1 3534246..3535394(-) (rapC) [Bacillus velezensis strain SRCM126726]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=858491 Q3O39_RS17490 WP_007410270.1 3534246..3535394(-) (rapC) [Bacillus velezensis strain SRCM126726]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTACCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAGGGGCTTCTCGATTATTACGTCAATTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGACACATATAACGTCCGGATTATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568