Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   QYC34_RS03350 Genome accession   NZ_CP129338
Coordinates   619386..619784 (-) Length   132 a.a.
NCBI ID   WP_021481824.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 614386..624784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS03315 (QYC34_03315) - 615251..615448 (+) 198 Protein_611 hypothetical protein -
  QYC34_RS03320 (QYC34_03320) - 615485..615805 (+) 321 Protein_612 RDD family protein -
  QYC34_RS03325 (QYC34_03325) yckD 615887..616219 (+) 333 WP_046160038.1 YckD family protein -
  QYC34_RS03330 (QYC34_03330) - 616346..616768 (+) 423 WP_174616579.1 MarR family winged helix-turn-helix transcriptional regulator -
  QYC34_RS03335 (QYC34_03335) - 616756..617097 (+) 342 WP_032724911.1 DUF3147 family protein -
  QYC34_RS03340 (QYC34_03340) - 617116..617844 (+) 729 WP_046160039.1 AAA family ATPase -
  QYC34_RS03345 (QYC34_03345) bglC 617916..619349 (+) 1434 WP_046160040.1 6-phospho-beta-glucosidase -
  QYC34_RS03350 (QYC34_03350) nin/comJ 619386..619784 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  QYC34_RS03355 (QYC34_03355) nucA/comI 619811..620260 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  QYC34_RS03360 (QYC34_03360) tlpC 620428..622149 (-) 1722 WP_046160041.1 methyl-accepting chemotaxis protein TlpC -
  QYC34_RS03365 (QYC34_03365) hxlB 622260..622817 (-) 558 WP_046160042.1 6-phospho-3-hexuloisomerase -
  QYC34_RS03370 (QYC34_03370) hxlA 622823..623455 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  QYC34_RS03375 (QYC34_03375) hxlR 623687..624049 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14962.93 Da        Isoelectric Point: 4.8991

>NTDB_id=852308 QYC34_RS03350 WP_021481824.1 619386..619784(-) (nin/comJ) [Bacillus subtilis strain SRCM126725]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=852308 QYC34_RS03350 WP_021481824.1 619386..619784(-) (nin/comJ) [Bacillus subtilis strain SRCM126725]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992