Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   QWY26_RS18330 Genome accession   NZ_CP129245
Coordinates   3841593..3842723 (+) Length   376 a.a.
NCBI ID   WP_002009557.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 13A297n     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3836593..3847723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY26_RS18305 (QWY26_18305) - 3836890..3837096 (-) 207 WP_000182542.1 hypothetical protein -
  QWY26_RS18310 (QWY26_18310) - 3837146..3839227 (-) 2082 WP_001120682.1 TonB-dependent copper receptor -
  QWY26_RS18315 (QWY26_18315) - 3839300..3839728 (-) 429 WP_000231981.1 DUF2946 family protein -
  QWY26_RS18320 (QWY26_18320) def 3839765..3840295 (-) 531 WP_001196539.1 peptide deformylase -
  QWY26_RS18325 (QWY26_18325) tsaP 3840418..3841572 (+) 1155 WP_000755280.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QWY26_RS18330 (QWY26_18330) dprA 3841593..3842723 (+) 1131 WP_002009557.1 DNA-processing protein DprA Machinery gene
  QWY26_RS18335 (QWY26_18335) - 3842774..3843343 (+) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  QWY26_RS18340 (QWY26_18340) - 3843735..3844655 (-) 921 WP_000084546.1 DMT family transporter -
  QWY26_RS18345 (QWY26_18345) - 3844761..3845411 (-) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  QWY26_RS18350 (QWY26_18350) - 3845548..3846762 (+) 1215 WP_000372838.1 MFS transporter -
  QWY26_RS18355 (QWY26_18355) - 3846784..3847548 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41960.56 Da        Isoelectric Point: 6.6647

>NTDB_id=851907 QWY26_RS18330 WP_002009557.1 3841593..3842723(+) (dprA) [Acinetobacter baumannii strain 13A297n]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDCLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAKNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=851907 QWY26_RS18330 WP_002009557.1 3841593..3842723(+) (dprA) [Acinetobacter baumannii strain 13A297n]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATTGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAAGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAGCCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTAAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAACATTTTCCACGGAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGTCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACGGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

99.202

100

0.992

  dprA Acinetobacter baumannii D1279779

98.404

100

0.984

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378