Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLD17_RS12485 Genome accession   NZ_CP129182
Coordinates   2285964..2286455 (-) Length   163 a.a.
NCBI ID   WP_015082943.1    Uniprot ID   A0A166XX03
Organism   Lactococcus cremoris strain D.1.7     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2280964..2291455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLD17_RS12485 (LLD17_12530) comX 2285964..2286455 (-) 492 WP_015082943.1 sigma-70 family RNA polymerase sigma factor Regulator
  LLD17_RS12490 (LLD17_12535) ezrA 2286719..2288449 (-) 1731 WP_081196899.1 septation ring formation regulator EzrA -
  LLD17_RS12495 (LLD17_12540) tsf 2288654..2289682 (-) 1029 WP_011677206.1 translation elongation factor Ts -
  LLD17_RS12500 (LLD17_12545) rpsB 2289804..2290571 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19661.45 Da        Isoelectric Point: 6.0256

>NTDB_id=851418 LLD17_RS12485 WP_015082943.1 2285964..2286455(-) (comX) [Lactococcus cremoris strain D.1.7]
MTYYLEENEFEGLFSGMKPIIRKLMKQIRIKAWDIEDYYQEGMIILHHLLEENHPSTNIYTKFKVKYHQRLIDELRHSYA
KKRLHDHFVGLDIYECSDWIDAGGSTPESELVFNHLLAEVYEGLSAHYQELLVRQMRGEELTRMECYRLREKIKNILFSR
DDD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=851418 LLD17_RS12485 WP_015082943.1 2285964..2286455(-) (comX) [Lactococcus cremoris strain D.1.7]
ATGACATATTACTTGGAAGAAAATGAATTCGAAGGTTTATTTTCTGGAATGAAACCAATCATCAGAAAATTGATGAAACA
AATTCGAATCAAAGCATGGGACATAGAGGATTATTATCAAGAAGGAATGATTATTTTGCATCACCTTTTAGAAGAAAATC
ACCCATCCACTAATATTTATACAAAGTTCAAAGTAAAATATCATCAACGTTTGATTGATGAACTACGCCATAGCTACGCC
AAAAAACGGCTTCATGACCATTTTGTAGGTCTAGACATTTATGAATGTTCGGACTGGATAGATGCAGGAGGAAGTACCCC
TGAAAGCGAGCTTGTGTTCAACCATCTTTTAGCAGAAGTTTATGAAGGATTGAGCGCCCACTATCAGGAATTACTCGTGC
GTCAAATGAGAGGAGAAGAACTCACGCGAATGGAATGCTATCGGCTACGAGAAAAAATCAAAAATATACTATTTTCTCGA
GATGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166XX03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

98.773

100

0.988
  comX Lactococcus lactis subsp. lactis strain DGCC12653

75.46

100

0.755