Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   QWH96_RS05725 Genome accession   NZ_CP128987
Coordinates   1115757..1116599 (-) Length   280 a.a.
NCBI ID   WP_338433608.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1110757..1121599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS05710 (QWH96_05710) - 1111594..1112457 (+) 864 WP_065359103.1 IS982-like element ISSpy2 family transposase -
  QWH96_RS05715 (QWH96_05715) - 1112565..1113448 (+) 884 Protein_1089 LysR family transcriptional regulator -
  QWH96_RS05720 (QWH96_05720) topA 1113524..1115656 (-) 2133 WP_014612281.1 type I DNA topoisomerase -
  QWH96_RS05725 (QWH96_05725) dprA 1115757..1116599 (-) 843 WP_338433608.1 DNA-processing protein DprA Machinery gene
  QWH96_RS05730 (QWH96_05730) - 1116706..1117476 (-) 771 WP_049519443.1 ribonuclease HII -
  QWH96_RS05735 (QWH96_05735) ylqF 1117466..1118314 (-) 849 WP_049519442.1 ribosome biogenesis GTPase YlqF -
  QWH96_RS05740 (QWH96_05740) - 1119037..1120254 (-) 1218 WP_049519440.1 MFS transporter -

Sequence


Protein


Download         Length: 280 a.a.        Molecular weight: 31306.33 Da        Isoelectric Point: 9.2510

>NTDB_id=850186 QWH96_RS05725 WP_338433608.1 1115757..1116599(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MNHFELYKLKKAGLTNKNILNILDYQKQQEKSLSLRDMAVVSGCKHPSHFIESYKQLDIQKLKMEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLDKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AVIGTGLDRFYPKENRELQTFLGRKHLILTEYGPGEEPLSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGESEGCLQLIKEGATCVTSGMDILSEYQK

Nucleotide


Download         Length: 843 bp        

>NTDB_id=850186 QWH96_RS05725 WP_338433608.1 1115757..1116599(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAGGCTGGACTGACTAATAAAAATATTCTCAATATTCTTGACTACCAAAA
GCAACAGGAAAAATCGTTGTCGCTTCGAGACATGGCCGTTGTTTCCGGTTGTAAGCACCCGTCTCACTTTATAGAAAGCT
ATAAGCAGTTAGATATCCAAAAGTTAAAAATGGAATTTAAACAATTCCCTAGTATTTCTATCCTAGATAAACATTACCCA
ATGGCTTTGAAAGAAATATATAATCCGCCCGTCCTCTTGTTTTTTCAAGGCAATTTAGACCTTCTTGATAAACCTAAATT
AGCCATTGTGGGCTCAAGGCGCTCAAGCGATACTGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTCAGCGGACTTGCTCGAGGTATTGACACTAGTGCACATTTAGCCTGTCTTAAAAACGGAGGACAAACCATT
GCGGTGATAGGAACAGGATTAGACCGTTTTTACCCTAAAGAAAATCGAGAATTACAAACATTCTTAGGAAGGAAACACCT
TATCTTGACGGAATACGGTCCAGGAGAAGAACCACTATCGTATCACTTTCCGGAACGCAATCGTATTATTGCAGGGCTTA
GTCGAGGTATTCTCGTCGTTGAAGCAAAAAATCGCTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAGGGTCGA
GATATTTTTGCTGTTCCAGGAAACATTTTGGACGGCGAATCTGAAGGTTGTTTACAGCTTATAAAAGAGGGAGCAACCTG
CGTCACATCAGGGATGGACATCCTTTCTGAATATCAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

67.266

99.286

0.668

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.573

99.643

0.604

  dprA/cilB/dalA Streptococcus pneumoniae D39

60.573

99.643

0.604

  dprA/cilB/dalA Streptococcus pneumoniae R6

60.573

99.643

0.604

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.573

99.643

0.604

  dprA/cilB/dalA Streptococcus mitis SK321

60.573

99.643

0.604

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

60.215

99.643

0.6

  dprA Lactococcus lactis subsp. cremoris KW2

57.554

99.286

0.571

  dprA Legionella pneumophila strain ERS1305867

42.917

85.714

0.368

  dprA Haemophilus influenzae Rd KW20

37.828

95.357

0.361

  dprA Acinetobacter baumannii D1279779

37.828

95.357

0.361

  dprA Acinetobacter baumannii strain A118

37.828

95.357

0.361