Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QQX51_RS23790 Genome accession   NZ_CP127120
Coordinates   5114904..5115428 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain USA_2_BIM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5109904..5120428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX51_RS23770 (QQX51_23750) pilR 5111166..5112503 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  QQX51_RS23775 (QQX51_23755) thiO 5112549..5113643 (-) 1095 WP_023103512.1 glycine oxidase ThiO -
  QQX51_RS23780 (QQX51_23760) - 5113783..5114283 (+) 501 WP_003116259.1 GspH/FimT family pseudopilin -
  QQX51_RS23785 (QQX51_23765) - 5114406..5114894 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  QQX51_RS23790 (QQX51_23770) pilV 5114904..5115428 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  QQX51_RS23795 (QQX51_23775) - 5115437..5116252 (+) 816 WP_003116262.1 PilW family protein -
  QQX51_RS23800 (QQX51_23780) - 5116249..5116854 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  QQX51_RS23805 (QQX51_23785) - 5116868..5118946 (+) 2079 WP_408585479.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=841890 QQX51_RS23790 WP_003116261.1 5114904..5115428(+) (pilV) [Pseudomonas aeruginosa strain USA_2_BIM]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=841890 QQX51_RS23790 WP_003116261.1 5114904..5115428(+) (pilV) [Pseudomonas aeruginosa strain USA_2_BIM]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598