Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QNM98_RS15355 Genome accession   NZ_CP126226
Coordinates   3088907..3089551 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain B31     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083907..3094551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNM98_RS15320 (QNM98_15320) - 3085092..3085523 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  QNM98_RS15325 (QNM98_15325) - 3085523..3085864 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  QNM98_RS15330 (QNM98_15330) - 3085857..3087338 (+) 1482 WP_045208748.1 Na+/H+ antiporter subunit D -
  QNM98_RS15335 (QNM98_15335) - 3087344..3087820 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  QNM98_RS15340 (QNM98_15340) - 3087820..3088104 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  QNM98_RS15345 (QNM98_15345) mnhG 3088088..3088462 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  QNM98_RS15350 (QNM98_15350) - 3088502..3088885 (-) 384 WP_053574130.1 hotdog fold thioesterase -
  QNM98_RS15355 (QNM98_15355) comA 3088907..3089551 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  QNM98_RS15360 (QNM98_15360) comP 3089632..3091935 (-) 2304 WP_284064747.1 histidine kinase Regulator
  QNM98_RS15365 (QNM98_15365) comX 3091955..3092134 (-) 180 WP_306383677.1 competence pheromone ComX -
  QNM98_RS15370 (QNM98_15370) comQ 3092088..3093074 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  QNM98_RS15375 (QNM98_15375) degQ 3093205..3093345 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  QNM98_RS15380 (QNM98_15380) - 3093811..3094152 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=837202 QNM98_RS15355 WP_003152052.1 3088907..3089551(-) (comA) [Bacillus velezensis strain B31]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=837202 QNM98_RS15355 WP_003152052.1 3088907..3089551(-) (comA) [Bacillus velezensis strain B31]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864