Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   JLZ01_RS08225 Genome accession   NZ_AP024155
Coordinates   1581211..1581606 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM 19855     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576211..1586606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLZ01_RS08200 (TUM19855C_15870) - 1576721..1577143 (-) 423 WP_003691751.1 very short patch repair endonuclease -
  JLZ01_RS11750 (TUM19855C_15880) - 1577149..1577745 (-) 597 WP_012503916.1 TIGR02391 family protein -
  JLZ01_RS11755 (TUM19855C_15890) - 1577935..1578792 (-) 858 WP_012503917.1 ATP-binding protein -
  JLZ01_RS08210 (TUM19855C_15900) - 1578806..1579135 (-) 330 WP_002234365.1 DNA cytosine methyltransferase -
  JLZ01_RS08215 - 1579174..1579782 (-) 609 WP_080229275.1 DNA cytosine methyltransferase -
  JLZ01_RS08220 (TUM19855C_15910) comP 1580674..1581123 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  JLZ01_RS08225 (TUM19855C_15920) comE 1581211..1581606 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  JLZ01_RS11760 - 1581708..1581827 (-) 120 Protein_1608 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=83700 JLZ01_RS08225 WP_003703428.1 1581211..1581606(-) (comE) [Neisseria gonorrhoeae strain TUM 19855]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=83700 JLZ01_RS08225 WP_003703428.1 1581211..1581606(-) (comE) [Neisseria gonorrhoeae strain TUM 19855]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment