Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH48_RS23090 Genome accession   NZ_CP126115
Coordinates   4665535..4667949 (-) Length   804 a.a.
NCBI ID   WP_283952158.1    Uniprot ID   A0AA95MZZ9
Organism   Neobacillus sp. YX16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4660535..4672949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH48_RS23070 (QNH48_23070) - 4663425..4664510 (-) 1086 WP_283952155.1 AI-2E family transporter -
  QNH48_RS23075 (QNH48_23075) - 4664607..4664741 (-) 135 WP_283952156.1 YrzQ family protein -
  QNH48_RS23080 (QNH48_23080) - 4664823..4665014 (-) 192 WP_045517826.1 hypothetical protein -
  QNH48_RS23085 (QNH48_23085) - 4665027..4665542 (-) 516 WP_283952157.1 PRC-barrel domain-containing protein -
  QNH48_RS23090 (QNH48_23090) recD2 4665535..4667949 (-) 2415 WP_283952158.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH48_RS23095 (QNH48_23095) - 4667981..4668634 (-) 654 WP_095250071.1 tetratricopeptide repeat protein -
  QNH48_RS23100 (QNH48_23100) mnmA 4668896..4670014 (-) 1119 WP_283952159.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH48_RS23105 (QNH48_23105) - 4670051..4671193 (-) 1143 WP_283955865.1 cysteine desulfurase family protein -
  QNH48_RS23110 (QNH48_23110) - 4671238..4671657 (-) 420 WP_283952160.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90903.96 Da        Isoelectric Point: 4.8691

>NTDB_id=836653 QNH48_RS23090 WP_283952158.1 4665535..4667949(-) (recD2) [Neobacillus sp. YX16]
MDKQSSLDLFAEQGKFVKGKHLVTIFHNEQNLYTVLRIRVEETNHEYDDKEAVITGYFPKIHEQETYIFFGEFKDHPKFG
MQFQTKHFRKDIPQTKQGVAAYLSSEMFKGIGKKTAENIVETLGEDAISKILNQPSLLDSVPKLPPDKAKMLYDTLMEHQ
GLEQVMVALNQYGFGPQLSMRMYQTYKDETLDIIQKNPYKLVEDIEGIGFGRADELGYQLGISGNHPDRIKAACLYSLEN
ESMQAGHVYVHVEDLLIQVKNLLEDNKRDQIEYTDISTEILKLEEEGKLVGEEKRVYLPSLYFAEKGLVTNIKTILEQTQ
YKEQFPESEFLLALGNLEERLKVQYAPTQREAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYHKKG
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGFNGSEGMDRDDVPELEGKILIVDETSMLDIWLANQLFKALPDTIQV
ILVGDEDQLPSVGPGQVLKDLLRSEVVPTVRLTDIYRQAEGSSIIELAHDIKKGYLPANVTMKQPDRSFIKCSTAQIPQV
IEKVALNAKSKGYSARDIQILAPMYRGPAGIDRLNVLLQEIFNPNPDGTRKEIAFGEVKYRIGDKVLQLVNQPESNVFNG
DIGEIISIIYAKENTEKQDMVYVSFEGNEVEYTRQDLNQITHAYCCSVHKSQGSEFPIVILPITRSYFRMLRRNLIYTAI
TRSKQSLILCGEEEALRMGVERADELSRQTTLSQKLQEMISVKDSPEVEETVDEPGLSAEERLMQVNPMIGMENLTPYDF
MVND

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=836653 QNH48_RS23090 WP_283952158.1 4665535..4667949(-) (recD2) [Neobacillus sp. YX16]
ATGGATAAGCAAAGCTCACTTGATTTATTTGCCGAGCAAGGAAAGTTCGTAAAAGGAAAACACCTTGTGACCATCTTTCA
TAATGAGCAAAATCTTTACACCGTTTTAAGAATTCGTGTAGAAGAAACGAATCATGAATATGATGACAAGGAAGCGGTAA
TTACCGGTTATTTTCCAAAGATTCACGAGCAGGAAACCTATATATTCTTTGGTGAGTTTAAGGATCATCCGAAGTTTGGC
ATGCAATTCCAAACAAAGCATTTTAGAAAGGATATTCCGCAAACCAAGCAAGGCGTGGCGGCATATTTATCAAGTGAAAT
GTTCAAAGGGATTGGGAAGAAAACAGCAGAAAACATCGTTGAAACATTAGGAGAAGACGCGATTTCAAAAATCTTAAATC
AGCCCTCCTTACTTGATTCTGTCCCAAAGCTTCCTCCTGATAAGGCGAAAATGCTATATGATACGTTGATGGAGCACCAG
GGTCTTGAGCAAGTGATGGTCGCTTTAAATCAATATGGCTTTGGCCCGCAGCTTTCCATGAGAATGTATCAAACCTATAA
GGATGAAACACTCGATATTATTCAAAAGAACCCTTATAAGCTTGTTGAGGATATCGAGGGAATTGGTTTTGGACGGGCAG
ACGAGTTAGGTTATCAACTGGGAATTTCAGGGAATCACCCCGACAGGATTAAAGCTGCCTGTCTATACTCACTTGAAAAC
GAAAGTATGCAGGCAGGCCATGTGTATGTTCATGTTGAGGACTTGTTAATACAGGTTAAAAATCTACTCGAAGATAATAA
ACGAGATCAAATTGAATACACCGATATTTCAACAGAGATTTTGAAACTCGAAGAAGAGGGAAAATTAGTTGGTGAGGAAA
AGCGCGTTTATTTGCCTTCGTTGTATTTTGCTGAAAAAGGACTCGTAACAAATATAAAAACAATCCTTGAACAAACACAG
TACAAGGAGCAATTTCCTGAATCGGAATTCTTGCTGGCATTAGGAAATCTTGAGGAAAGGCTAAAGGTACAGTATGCACC
CACCCAAAGAGAAGCGATTCAAACGGCCTTAATGTCTCCGATGTTAATTTTAACAGGGGGTCCTGGAACAGGTAAAACCA
CTGTCATTAAGGGGATTGTTGAGCTTTATGCGGAATTGCATGGCTGCTCATTAGAGCCGAAAGATTATCATAAAAAGGGC
GAACCCTTTCCATTTTTACTAGCAGCACCGACAGGAAGGGCAGCAAAAAGAATGAGTGAATCCACCGGTCTGCCGGCTGT
GACGATTCACCGTTTACTTGGTTTTAATGGATCAGAAGGAATGGATCGTGATGATGTTCCTGAACTTGAAGGGAAAATTC
TGATTGTTGATGAGACCTCGATGCTTGATATCTGGTTAGCAAATCAATTGTTTAAAGCACTGCCGGATACCATTCAGGTT
ATTCTAGTAGGGGATGAAGATCAGCTGCCTTCTGTGGGGCCAGGTCAAGTGCTAAAAGATTTATTGAGATCTGAGGTAGT
CCCAACCGTTAGATTAACAGATATTTATCGACAGGCAGAAGGATCCTCAATTATTGAATTGGCTCATGATATCAAGAAGG
GTTACTTACCAGCGAATGTTACTATGAAGCAGCCTGACCGTTCGTTTATTAAGTGTTCGACGGCTCAGATTCCTCAAGTA
ATTGAAAAGGTTGCTCTAAATGCCAAAAGTAAGGGTTATTCAGCCAGGGATATCCAAATCCTGGCACCCATGTACAGAGG
TCCTGCAGGGATTGATAGACTAAATGTCTTGTTACAAGAGATCTTTAATCCAAACCCTGATGGAACTCGAAAGGAAATAG
CATTTGGAGAAGTGAAATACCGCATCGGTGATAAGGTCCTTCAGCTTGTAAATCAACCAGAAAGCAACGTTTTTAACGGA
GATATTGGAGAAATTATATCTATTATCTATGCAAAAGAAAATACAGAAAAACAAGATATGGTATACGTTTCCTTTGAAGG
AAATGAAGTTGAATATACAAGACAGGACTTGAATCAAATTACTCATGCTTATTGTTGTTCGGTACATAAATCTCAGGGAA
GCGAATTCCCGATTGTTATCCTTCCTATTACAAGAAGCTATTTTCGAATGTTACGCAGGAATCTTATCTATACAGCGATA
ACTCGAAGTAAACAGTCCCTAATCCTTTGTGGTGAAGAGGAAGCATTAAGGATGGGTGTGGAAAGAGCGGATGAACTAAG
CAGACAAACCACATTATCCCAAAAGCTTCAGGAGATGATATCAGTCAAGGATTCTCCGGAAGTTGAAGAAACTGTAGATG
AACCAGGACTATCAGCAGAAGAAAGATTAATGCAGGTCAACCCAATGATTGGCATGGAAAACCTTACACCTTATGATTTC
ATGGTAAATGACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.364

98.507

0.604