Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   U5640_RS30795 Genome accession   NZ_CP141223
Coordinates   6689791..6691524 (-) Length   577 a.a.
NCBI ID   WP_340379802.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6684791..6696524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rcrP 6689791..6691524 (-) 1734 - - Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62592.75 Da        Isoelectric Point: 6.7534

>NTDB_id=836637 U5640_RS30795 WP_340379802.1 6689791..6691524(-) (rcrP) [Streptomyces sp. SS7]
MLIRLLRTYLRPYKKPIVLLVLLQFLQTCATLYLPTLNAHIIDNGVVEGDTGYILSYGGLMIGISLAQVVCNIGAVYYGA
RTASALGRDVRAGVFDRVQSFSSREVGQFGAPSLITRTTNDVQQIQMLSLMAFTLMASAPIMCVGGIVMALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANSDLTGISLKTGNMLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGQMQIGDLTAFLAYLMQIVMSVMMATFMFMQVPRAEVCAERIQEVLGTSSSVVP
PAAPVTELRRHGHLEIRAAGFRYPGAEEPVLKAIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVPVA
DVDPVLLARTVGLVPQKPYLFAGTVASNLRYGNPDATDEELWHALEVAQAKDFVSKLENGLDSPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGTGTHRELMTDN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=836637 U5640_RS30795 WP_340379802.1 6689791..6691524(-) (rcrP) [Streptomyces sp. SS7]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATCGTCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCTTGTACCTGCCCACGCTGAACGCGCACATCATCGACAACGGCGTCGTCGAGGGGGACACCGGTTACA
TCCTGTCCTACGGCGGTCTGATGATCGGCATCTCGCTGGCGCAGGTCGTCTGCAACATCGGCGCCGTCTACTACGGTGCC
CGGACCGCCTCCGCGCTCGGCCGGGACGTCCGGGCGGGCGTCTTCGACCGGGTGCAGTCCTTCTCCTCCCGGGAGGTCGG
TCAGTTCGGCGCGCCGTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGATCCAGATGCTGTCGCTGATGGCGTTCA
CCCTCATGGCGTCCGCGCCGATCATGTGTGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCCGTCGTGCCGGTGCTGGGCATCTGCGTGACGCTGATCGTACGGCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGCCTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCGTTCGTCCGCGACG
AGTACGAGCAGCAGCGGTTCCGGAAGGCCAACAGCGACCTCACCGGCATCTCGCTGAAGACCGGCAACATGCTGGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCCTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CCAGATGCAGATCGGTGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGCAGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTCGGGACCTCGTCCTCCGTGGTGCCT
CCGGCGGCGCCCGTCACCGAGCTGCGGCGGCACGGGCATCTGGAGATCCGGGCGGCCGGCTTCCGCTACCCGGGGGCCGA
GGAGCCCGTCCTCAAGGCGATCGACCTGGTGGCGCGGCCCGGTGAGGTCACCGCCGTCATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTCGGTCTGGTCCCCCGGCTGTTCGACGCGACCGACGGGGAGGTGCTGGTCGACGGGGTGCCGGTGGCC
GACGTCGATCCGGTCCTGCTCGCCCGGACCGTCGGGCTCGTCCCACAGAAGCCGTACCTCTTCGCGGGGACCGTCGCGAG
CAATCTGCGCTACGGCAACCCGGACGCGACGGACGAGGAGCTGTGGCACGCCCTGGAGGTGGCCCAGGCCAAGGACTTCG
TGAGCAAGCTGGAGAACGGGCTGGACTCCCCCGTCGCCCAGGGCGGCACCAACGTCTCCGGCGGTCAGCGGCAGCGGCTG
GCGATCGCCCGGACGCTCGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCGGCGCTCGGCCGGGAGACGGCCGAGGCGACGGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCACGCACCGTGAGCTGATGACGGACAAC
CAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.899

97.574

0.38