Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   U5640_RS12105 Genome accession   NZ_CP141223
Coordinates   2703091..2704389 (-) Length   432 a.a.
NCBI ID   WP_340375816.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2698091..2709389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rarA 2703091..2704389 (-) 1299 - - Machinery gene

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 46046.47 Da        Isoelectric Point: 6.4423

>NTDB_id=836599 U5640_RS12105 WP_340375816.1 2703091..2704389(-) (rarA) [Streptomyces sp. SS7]
MPTTTHQPLAARMRPTSLDQIVGQAHLVFPGSPLELLVSGRGATSVLLYGPPGCGKTTIASVVAHQTSRRFVELSATSAG
VAEVRKVLAAAQKELDVDGTRTLVFIDEIHRFSKAQQDVLLPAVEDGVISLIGATTENPIFSVNAALVSRSILMVLKPIS
TADIVKLLARALNEDPDLDGHVSAESSVLELIANLSAGDVRQALSRLETAAATAMAAGETEVTARTIELVTGAALQRCDR
DQHYDVISAFIKSLRGSDPDAALHWLARMLEAGEDPRFIARRLIVHASEDVGMADPSVLSIAVAAAQAVQLIGMPEARIN
LAQATVAIATAPKSPAIVRGIDQALADVRRGRTGEVPVHLRDAHYPGSKALGHGQGYLYPHDFEHGVVTQQYLPDRALGT
QYYLPTSNGFEQTISQRLSAIRSLTATQENRP

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=836599 U5640_RS12105 WP_340375816.1 2703091..2704389(-) (rarA) [Streptomyces sp. SS7]
GTGCCAACCACCACCCATCAGCCCCTGGCCGCCCGCATGCGGCCGACGTCGCTCGACCAGATCGTCGGACAGGCGCACCT
CGTCTTCCCCGGCTCGCCGCTCGAACTGCTCGTGTCCGGCCGCGGCGCGACCTCAGTGCTCCTGTACGGCCCGCCAGGAT
GCGGCAAGACCACCATCGCCAGCGTCGTCGCGCACCAGACGAGCCGCCGCTTCGTCGAGCTCTCTGCCACGTCGGCGGGC
GTCGCCGAGGTGCGCAAGGTGCTTGCCGCGGCCCAGAAGGAGCTCGACGTCGACGGCACCCGGACGCTCGTGTTCATCGA
CGAGATCCACCGCTTCTCCAAGGCTCAGCAGGATGTGCTCCTGCCTGCCGTGGAGGACGGCGTCATCTCGCTGATCGGCG
CGACGACCGAGAACCCGATCTTCAGCGTGAACGCTGCGCTGGTGTCGCGTTCGATCCTCATGGTGCTCAAGCCGATCAGC
ACCGCCGACATCGTGAAGCTCCTCGCCCGCGCGCTCAATGAGGACCCTGACCTCGATGGCCACGTCAGCGCAGAGTCTTC
GGTGCTCGAACTGATCGCGAACCTGTCCGCCGGCGACGTGCGCCAGGCGCTCAGCCGCCTTGAGACGGCTGCCGCCACAG
CGATGGCTGCTGGCGAGACGGAGGTCACCGCCCGGACCATCGAGCTCGTTACCGGCGCAGCACTCCAGCGCTGCGACCGC
GACCAGCACTACGACGTCATCTCGGCGTTCATCAAGTCGCTTCGCGGCTCGGATCCCGACGCTGCCCTGCACTGGCTGGC
CCGGATGCTCGAGGCGGGGGAGGACCCGCGGTTCATCGCTCGCCGGCTGATCGTGCACGCCAGCGAGGACGTCGGCATGG
CTGATCCGTCGGTGCTCTCCATCGCAGTGGCCGCCGCGCAGGCGGTTCAGCTGATCGGCATGCCGGAAGCCCGGATCAAC
CTTGCCCAGGCGACGGTTGCGATCGCCACGGCTCCCAAGTCGCCGGCCATCGTCCGTGGTATCGACCAGGCGCTCGCAGA
TGTGCGGCGTGGCCGCACCGGGGAGGTCCCGGTGCATCTGCGCGATGCGCACTACCCGGGATCCAAGGCCCTCGGCCACG
GCCAGGGATATCTGTACCCGCACGACTTCGAGCACGGCGTCGTCACCCAGCAGTACCTACCCGACCGAGCGCTCGGCACG
CAGTACTACCTGCCGACATCCAACGGCTTCGAACAAACCATCAGCCAACGGCTGAGCGCTATCCGTAGCCTCACCGCGAC
CCAGGAGAACAGACCATGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(180-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(13-132)

MgsA AAA+ ATPase C terminal (MgsA_C)

(256-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.885

96.528

0.424