Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QNK08_RS18535 Genome accession   NZ_CP125983
Coordinates   3461543..3462265 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY04     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3456543..3467265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS18500 (QNK08_18525) fliW 3456683..3457114 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  QNK08_RS18505 (QNK08_18530) yviE 3457135..3457710 (-) 576 WP_015384781.1 DUF6470 family protein -
  QNK08_RS18510 (QNK08_18535) flgL 3457757..3458653 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  QNK08_RS18515 (QNK08_18540) flgK 3458664..3460187 (-) 1524 WP_069964359.1 flagellar hook-associated protein FlgK -
  QNK08_RS18520 (QNK08_18545) flgN 3460206..3460688 (-) 483 WP_014481048.1 flagellar protein FlgN -
  QNK08_RS18525 (QNK08_18550) flgM 3460704..3460970 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNK08_RS18530 (QNK08_18555) yvyF 3461051..3461470 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  QNK08_RS18535 (QNK08_18560) comFC 3461543..3462265 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QNK08_RS18540 (QNK08_18565) comFB 3462229..3462525 (-) 297 WP_003227989.1 late competence protein ComFB -
  QNK08_RS18545 (QNK08_18570) comFA 3462585..3463976 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  QNK08_RS18550 (QNK08_18575) fakBA 3464083..3464928 (-) 846 WP_014481053.1 DegV family protein -
  QNK08_RS18555 (QNK08_18580) degU 3465026..3465715 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  QNK08_RS18560 (QNK08_18585) degS 3465798..3466955 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=834091 QNK08_RS18535 WP_014481051.1 3461543..3462265(-) (comFC) [Bacillus subtilis strain ZKY04]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=834091 QNK08_RS18535 WP_014481051.1 3461543..3462265(-) (comFC) [Bacillus subtilis strain ZKY04]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992