Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QNK10_RS12845 Genome accession   NZ_CP125982
Coordinates   2393379..2394146 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain ZKY05     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2388379..2399146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK10_RS12825 (QNK10_12835) ppsR 2388554..2389366 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  QNK10_RS12830 (QNK10_12840) ccpN 2389392..2390030 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  QNK10_RS12835 (QNK10_12845) glyS 2390163..2392202 (-) 2040 WP_029317896.1 glycine--tRNA ligase subunit beta -
  QNK10_RS12840 (QNK10_12850) glyQ 2392195..2393082 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  QNK10_RS12845 (QNK10_12855) recO 2393379..2394146 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  QNK10_RS12850 (QNK10_12860) yqzL 2394183..2394326 (-) 144 WP_003230053.1 YqzL family protein -
  QNK10_RS12855 (QNK10_12865) era 2394474..2395379 (-) 906 WP_003230051.1 GTPase Era -
  QNK10_RS12860 (QNK10_12870) - 2395360..2395770 (-) 411 WP_003230049.1 cytidine deaminase -
  QNK10_RS12865 (QNK10_12875) unpK 2395889..2396260 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  QNK10_RS12870 (QNK10_12880) ybeY 2396241..2396714 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  QNK10_RS12875 (QNK10_12885) pgpH 2396715..2398850 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=833995 QNK10_RS12845 WP_014477369.1 2393379..2394146(-) (recO) [Bacillus subtilis strain ZKY05]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=833995 QNK10_RS12845 WP_014477369.1 2393379..2394146(-) (recO) [Bacillus subtilis strain ZKY05]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996