Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QM970_RS12540 Genome accession   NZ_CP125980
Coordinates   2340917..2341252 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain ZKY03     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2335917..2346252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM970_RS12520 (QM970_12515) gcvT 2336509..2337597 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  QM970_RS12525 (QM970_12520) hepAA 2338039..2339712 (+) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  QM970_RS12530 (QM970_12525) yqhG 2339733..2340527 (+) 795 WP_264379318.1 YqhG family protein -
  QM970_RS12535 (QM970_12530) sinI 2340710..2340883 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  QM970_RS12540 (QM970_12535) sinR 2340917..2341252 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QM970_RS12545 (QM970_12540) tasA 2341345..2342130 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  QM970_RS12550 (QM970_12545) sipW 2342194..2342766 (-) 573 WP_003230181.1 signal peptidase I SipW -
  QM970_RS12555 (QM970_12550) tapA 2342750..2343511 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  QM970_RS12560 (QM970_12555) yqzG 2343783..2344109 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QM970_RS12565 (QM970_12560) spoIITA 2344151..2344330 (-) 180 WP_014480252.1 YqzE family protein -
  QM970_RS12570 (QM970_12565) comGG 2344401..2344775 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  QM970_RS12575 (QM970_12570) comGF 2344776..2345159 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  QM970_RS12580 (QM970_12575) comGE 2345185..2345532 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  QM970_RS12585 (QM970_12580) comGD 2345516..2345947 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  QM970_RS12590 (QM970_12585) comGC 2345937..2346233 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=833832 QM970_RS12540 WP_003226345.1 2340917..2341252(+) (sinR) [Bacillus subtilis strain ZKY03]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=833832 QM970_RS12540 WP_003226345.1 2340917..2341252(+) (sinR) [Bacillus subtilis strain ZKY03]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1