Detailed information NTG0830718

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: QLX65_RS01960
• Genome accession: NZ_CP125289
• Coordinates: 382783..383931 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SF334
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 377783..388931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLX65_RS01940 (QLX65_01940)	-	378180..378863 (-)	684	WP_003156346.1	ABC transporter ATP-binding protein	-
QLX65_RS01945 (QLX65_01945)	-	378878..380314 (-)	1437	WP_060386756.1	ABC transporter permease	-
QLX65_RS01950 (QLX65_01950)	-	380527..381210 (+)	684	WP_003156341.1	response regulator transcription factor	-
QLX65_RS01955 (QLX65_01955)	-	381197..382630 (+)	1434	WP_161625271.1	HAMP domain-containing sensor histidine kinase	-
QLX65_RS01960 (QLX65_01960)	rapC	382783..383931 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
QLX65_RS01965 (QLX65_01965)	phrC	383915..384034 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
QLX65_RS01970 (QLX65_01970)	-	384184..384279 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
QLX65_RS01975 (QLX65_01975)	-	384374..385738 (-)	1365	WP_003156333.1	aspartate kinase	-
QLX65_RS01980 (QLX65_01980)	ceuB	386153..387106 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
QLX65_RS01985 (QLX65_01985)	-	387096..388043 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
QLX65_RS01990 (QLX65_01990)	-	388037..388795 (+)	759	WP_283002496.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=830718 QLX65_RS01960 WP_003156336.1 382783..383931(+) (rapC) [Bacillus velezensis strain SF334]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=830718 QLX65_RS01960 WP_003156336.1 382783..383931(+) (rapC) [Bacillus velezensis strain SF334]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568