Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QLX50_RS01770 Genome accession   NZ_CP125283
Coordinates   330123..330560 (-) Length   145 a.a.
NCBI ID   WP_038456921.1    Uniprot ID   -
Organism   Bacillus velezensis strain IFST-221     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 325123..335560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS01740 (QLX50_01740) - 325991..327193 (+) 1203 WP_044802744.1 GTP-binding protein -
  QLX50_RS01745 (QLX50_01745) - 327258..328394 (+) 1137 WP_044802745.1 zinc-dependent alcohol dehydrogenase -
  QLX50_RS01750 (QLX50_01750) - 328409..328843 (+) 435 WP_021494203.1 RDD family protein -
  QLX50_RS01755 (QLX50_01755) - 328916..329239 (+) 324 WP_007409357.1 YckD family protein -
  QLX50_RS01760 (QLX50_01760) - 329445..329663 (+) 219 Protein_306 family 1 glycosylhydrolase -
  QLX50_RS01765 (QLX50_01765) nin/comJ 329704..330102 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  QLX50_RS01770 (QLX50_01770) nucA/comI 330123..330560 (-) 438 WP_038456921.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QLX50_RS01775 (QLX50_01775) hxlB 330918..331475 (-) 558 WP_044802747.1 6-phospho-3-hexuloisomerase -
  QLX50_RS01780 (QLX50_01780) hxlA 331472..332107 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  QLX50_RS01785 (QLX50_01785) - 332339..332701 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16099.38 Da        Isoelectric Point: 8.4850

>NTDB_id=830583 QLX50_RS01770 WP_038456921.1 330123..330560(-) (nucA/comI) [Bacillus velezensis strain IFST-221]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKNDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=830583 QLX50_RS01770 WP_038456921.1 330123..330560(-) (nucA/comI) [Bacillus velezensis strain IFST-221]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAATGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGTCGT
GAGCAATCTCTTAAACATGTACCTGTAAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641