Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFX56_RS10630 Genome accession   NZ_CP123738
Coordinates   2121975..2122370 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2116975..2127370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX56_RS10605 thiE 2117574..2118215 (-) 642 WP_000483156.1 thiamine phosphate synthase -
  QFX56_RS10610 thiM 2118217..2119008 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  QFX56_RS10615 thiD 2118992..2119822 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFX56_RS10620 tenA 2119815..2120505 (-) 691 Protein_2057 thiaminase II -
  QFX56_RS10625 sceD 2120891..2121586 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  QFX56_RS10630 ssb 2121975..2122370 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QFX56_RS10635 - 2122564..2123004 (+) 441 WP_000846746.1 YwpF-like family protein -
  QFX56_RS10640 fabZ 2123062..2123502 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QFX56_RS10645 murA 2123536..2124801 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QFX56_RS10650 - 2124912..2125145 (-) 234 WP_000384523.1 DUF1146 family protein -
  QFX56_RS10655 - 2125277..2125369 (-) 93 WP_001790611.1 hypothetical protein -
  QFX56_RS10660 - 2125764..2126168 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=821992 QFX56_RS10630 WP_000932694.1 2121975..2122370(-) (ssb) [Staphylococcus aureus strain 2.6]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=821992 QFX56_RS10630 WP_000932694.1 2121975..2122370(-) (ssb) [Staphylococcus aureus strain 2.6]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992