Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QFX56_RS04440 Genome accession   NZ_CP123738
Coordinates   926097..927083 (+) Length   328 a.a.
NCBI ID   WP_304984497.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 921097..932083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX56_RS04415 opp4B 921309..922271 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  QFX56_RS04420 opp4C 922283..923164 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  QFX56_RS04425 trpS 923206..924195 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  QFX56_RS04430 spxA 924490..924885 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  QFX56_RS04435 mecA 925257..925976 (+) 720 WP_001217728.1 adaptor protein MecA -
  QFX56_RS04440 coiA 926097..927083 (+) 987 WP_304984497.1 competence protein CoiA Machinery gene
  QFX56_RS04445 pepF 927131..928939 (+) 1809 WP_304984498.1 oligoendopeptidase F -
  QFX56_RS04450 yjbH 929399..930205 (-) 807 WP_000896696.1 protease adaptor protein YjbH -
  QFX56_RS04455 - 930228..930593 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  QFX56_RS04460 - 930697..931290 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  QFX56_RS04465 - 931476..931823 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38913.57 Da        Isoelectric Point: 9.6528

>NTDB_id=821966 QFX56_RS04440 WP_304984497.1 926097..927083(+) (coiA) [Staphylococcus aureus strain 2.6]
MLVALKEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=821966 QFX56_RS04440 WP_304984497.1 926097..927083(+) (coiA) [Staphylococcus aureus strain 2.6]
ATGTTAGTAGCTTTAAAGGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979